UHGV-0451777

Genome information

Genome length 23,447 bps

CDS count 37

Completeness 60.62% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0451777
vOTU ID	vOTU-032932
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_4939
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.89
Jumbo phage	No

Genome content
Genome length	23,447 bps
GC content	32.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.82%
Average CDS length	590.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0451777_3	UniRef90	UniRef90_A0A1Y4IQK9	NA	NA
UHGV-0451777_3	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0451777_3	Pfam	PF05339	NA	DUF739
UHGV-0451777_3	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0451777_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0451777_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0451777_4	UniRef90	UniRef90_UPI001CF91FD5	helix-turn-helix domain-containing protein	NA
UHGV-0451777_4	eggNOG-mapper	1273103.NM10_06896	Peptidase S24-like	NA
UHGV-0451777_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0451777_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0451777_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0451777_4	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0451777_5	PHROG	phrog_888	NA	unknown function
UHGV-0451777_5	UniRef90	UniRef90_A0A1Y3TQU6	SHOCT domain-containing protein	NA
UHGV-0451777_5	eggNOG-mapper	1487921.DP68_09025	NA	NA
UHGV-0451777_5	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0451777_6	KOfam	K14059	int; integrase	NA
UHGV-0451777_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0451777_6	UniRef90	UniRef90_A0A6N9L4Z3	Tyrosine-type recombinase/integrase	NA
UHGV-0451777_6	eggNOG-mapper	1124578.H0UST3_9CAUD	Phage integrase family	NA
UHGV-0451777_6	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0451777_6	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0451777_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0451777_6	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0451777_7	eggNOG-mapper	999415.HMPREF9943_00145	NA	NA
UHGV-0451777_12	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0451777_12	PHROG	phrog_3088	amidase	lysis
UHGV-0451777_12	UniRef90	UniRef90_A0A1Y4R8C5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0451777_12	eggNOG-mapper	198094.BA_3767	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0451777_12	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0451777_12	COG	COG3103	NA	NA
UHGV-0451777_14	PHROG	phrog_4105	NA	unknown function
UHGV-0451777_14	eggNOG-mapper	97139.C824_05951	NA	NA
UHGV-0451777_15	PHROG	phrog_1129	holin	lysis
UHGV-0451777_15	UniRef90	UniRef90_A0A3E3DX81	Holin	NA
UHGV-0451777_15	eggNOG-mapper	552396.HMPREF0863_01649	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0451777_15	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0451777_15	Structural annotation	PF06946	NA	NA
UHGV-0451777_21	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0451777_23	UniRef90	UniRef90_UPI001CA48B38	collagen-like protein	NA
UHGV-0451777_23	eggNOG-mapper	908340.HMPREF9406_2567	NA	NA
UHGV-0451777_24	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0451777_24	UniRef90	UniRef90_UPI000E417F59	phage tail protein	NA
UHGV-0451777_24	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0451777_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0451777_24	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0451777_24	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0451777_24	COG	COG4926	Phage-related protein	NA
UHGV-0451777_24	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0451777_25	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0451777_25	UniRef90	UniRef90_A0A3E3EI44	Phage tail protein	NA
UHGV-0451777_25	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-0451777_25	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0451777_25	COG	COG4722	Phage-related protein YomH	NA
UHGV-0451777_25	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0451777_26	PHROG	phrog_23464	NA	unknown function
UHGV-0451777_26	UniRef90	UniRef90_A0A4U7JDN1	Phage tail tape measure protein	NA
UHGV-0451777_26	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0451777_26	COG	COG5412	Phage-related protein	NA
UHGV-0451777_26	Structural annotation	PF20155	NA	NA
UHGV-0451777_28	PHROG	phrog_709	NA	unknown function
UHGV-0451777_28	eggNOG-mapper	386043.lwe1232	NA	NA
UHGV-0451777_28	Structural annotation	PF11836	NA	NA
UHGV-0451777_29	PHROG	phrog_88	major tail protein	tail
UHGV-0451777_29	UniRef90	UniRef90_A0A3E3EG64	Phage tail protein	NA
UHGV-0451777_29	eggNOG-mapper	476272.RUMHYD_01477	COG NOG11304 non supervised orthologous group	NA
UHGV-0451777_29	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0451777_29	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0451777_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0451777_30	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0451777_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0451777_31	eggNOG-mapper	1169144.KB910924_gene332	NA	NA
UHGV-0451777_31	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0451777_32	PHROG	phrog_19734	NA	unknown function
UHGV-0451777_32	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0451777_32	Structural annotation	PF16467, MF_01457, TIGR01563, COG5614	NA	NA
UHGV-0451777_33	PHROG	phrog_749	NA	unknown function
UHGV-0451777_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0451777_34	UniRef90	UniRef90_A0A3E3EGM4	Phage major capsid protein	NA
UHGV-0451777_34	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0451777_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0451777_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0451777_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0451777_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0451777_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0451777_35	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0451777_35	UniRef90	UniRef90_A0A3E3EG77	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0451777_35	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0451777_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0451777_35	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0451777_35	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0451777_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0451777_36	UniRef90	UniRef90_A0A3E3EI59	Phage portal protein	NA
UHGV-0451777_36	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0451777_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0451777_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0451777_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0451777_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0451777_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0451777_37	UniRef90	UniRef90_A0A3E3EH16	Terminase	NA
UHGV-0451777_37	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0451777_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0451777_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0451777_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0451777_37	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA