UHGV-0454129

Genome information

Genome length 29,136 bps

CDS count 50

Completeness 71.32% (medium-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-0454129
vOTU ID	vOTU-032935
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_4088
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.34
Jumbo phage	No

Genome content
Genome length	29,136 bps
GC content	40.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	89.58%
Average CDS length	528.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0454129_1	eggNOG-mapper	908340.HMPREF9406_3182	NA	NA
UHGV-0454129_3	KOfam	K14059	int; integrase	NA
UHGV-0454129_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0454129_3	UniRef90	UniRef90_G1VMI7	Tyr recombinase domain-containing protein	NA
UHGV-0454129_3	eggNOG-mapper	1280689.AUJC01000011_gene1488	Phage integrase family	NA
UHGV-0454129_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0454129_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0454129_3	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0454129_4	UniRef90	UniRef90_A0A890GZR9	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0454129_4	eggNOG-mapper	1123252.ATZF01000024_gene3064	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0454129_4	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0454129_4	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0454129_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0454129_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0454129_5	UniRef90	UniRef90_A0A318KI33	Peptidase S24-like protein	NA
UHGV-0454129_5	eggNOG-mapper	1232453.BAIF02000027_gene4195	Peptidase S24-like	NA
UHGV-0454129_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0454129_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0454129_5	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0454129_5	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0454129_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0454129_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0454129_10	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0454129_10	UniRef90	UniRef90_UPI000E49576D	phage antirepressor KilAC domain-containing protein	NA
UHGV-0454129_10	eggNOG-mapper	1123263.AUKY01000076_gene1778	Phage antirepressor protein	NA
UHGV-0454129_10	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0454129_10	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0454129_10	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0454129_10	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0454129_11	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0454129_11	UniRef90	UniRef90_H1BHQ8	Bro-N domain-containing protein	NA
UHGV-0454129_11	eggNOG-mapper	1121342.AUCO01000004_gene621	Phage antirepressor protein	NA
UHGV-0454129_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0454129_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0454129_11	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0454129_12	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0454129_12	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0454129_12	UniRef90	UniRef90_R6VYG9	Bro-N domain-containing protein	NA
UHGV-0454129_12	eggNOG-mapper	658655.HMPREF0988_02543	Phage regulatory protein	NA
UHGV-0454129_12	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0454129_12	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0454129_12	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0454129_12	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0454129_15	eggNOG-mapper	1235793.C809_00543	NA	NA
UHGV-0454129_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0454129_22	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0454129_22	UniRef90	UniRef90_UPI001E328661	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0454129_22	eggNOG-mapper	1211817.CCAT010000007_gene1058	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0454129_22	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0454129_22	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0454129_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0454129_22	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0454129_23	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0454129_23	UniRef90	UniRef90_H1BHS1	Inhibitor_G39P domain-containing protein	NA
UHGV-0454129_23	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0454129_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0454129_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0454129_24	UniRef90	UniRef90_H1B475	SF4 helicase domain-containing protein	NA
UHGV-0454129_24	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0454129_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0454129_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-0454129_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0454129_26	PHROG	phrog_17842	NA	unknown function
UHGV-0454129_30	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0454129_34	PHROG	phrog_1233	NA	unknown function
UHGV-0454129_34	eggNOG-mapper	1232449.BAHV02000018_gene1535	NA	NA
UHGV-0454129_35	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0454129_35	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0454129_35	UniRef90	UniRef90_UPI000E52C41D	terminase small subunit	NA
UHGV-0454129_35	eggNOG-mapper	428127.EUBDOL_01230	terminase (Small subunit)	NA
UHGV-0454129_35	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0454129_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0454129_35	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0454129_35	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0454129_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0454129_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0454129_36	UniRef90	UniRef90_N9VB01	PBSX family phage terminase, large subunit	NA
UHGV-0454129_36	eggNOG-mapper	999413.HMPREF1094_00221	Phage terminase, large subunit, PBSX family	NA
UHGV-0454129_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0454129_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0454129_36	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0454129_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0454129_37	UniRef90	UniRef90_C0CSR5	Putative phage minor capsid protein	NA
UHGV-0454129_37	eggNOG-mapper	999413.HMPREF1094_00220	phage minor capsid protein	NA
UHGV-0454129_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0454129_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0454129_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0454129_38	UniRef90	UniRef90_A0A223MHV7	Minor capsid protein	NA
UHGV-0454129_38	eggNOG-mapper	999413.HMPREF1094_00219	Phage minor capsid protein 2	NA
UHGV-0454129_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0454129_38	COG	COG2369	NA	NA
UHGV-0454129_38	Structural annotation	PF06152	NA	NA
UHGV-0454129_40	eggNOG-mapper	999413.HMPREF1094_00217	NA	NA
UHGV-0454129_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0454129_41	UniRef90	UniRef90_UPI001EDCE3E2	phage scaffolding protein	NA
UHGV-0454129_41	eggNOG-mapper	999413.HMPREF1094_00216	COG NOG36366 non supervised orthologous group	NA
UHGV-0454129_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0454129_41	Structural annotation	PF06810	NA	NA
UHGV-0454129_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-0454129_42	UniRef90	UniRef90_N9VBL2	HK97 family phage major capsid protein	NA
UHGV-0454129_42	eggNOG-mapper	999413.HMPREF1094_00215	Phage capsid family	NA
UHGV-0454129_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0454129_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0454129_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0454129_42	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0454129_43	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0454129_44	Structural annotation	PF20536	NA	NA
UHGV-0454129_45	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0454129_45	UniRef90	UniRef90_UPI001BA7D0C3	minor capsid protein	NA
UHGV-0454129_45	eggNOG-mapper	999413.HMPREF1094_00212	Minor capsid protein	NA
UHGV-0454129_45	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0454129_45	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0454129_46	UniRef90	UniRef90_UPI001430E854	ABC transporter permease	NA
UHGV-0454129_46	Structural annotation	PF16807	NA	NA
UHGV-0454129_47	PHROG	phrog_3099	NA	unknown function
UHGV-0454129_47	eggNOG-mapper	1321782.HMPREF1986_02273	NA	NA
UHGV-0454129_48	Structural annotation	PF10666	NA	NA
UHGV-0454129_49	PHROG	phrog_706	NA	unknown function
UHGV-0454129_49	UniRef90	UniRef90_UPI001E5E5ED8	bacteriophage Gp15 family protein	NA
UHGV-0454129_49	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-0454129_49	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0454129_49	Structural annotation	PF06854	NA	NA
UHGV-0454129_50	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0454129_50	UniRef90	UniRef90_G1VS78	TMP_3 domain-containing protein	NA
UHGV-0454129_50	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-0454129_50	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0454129_50	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0454129_50	COG	COG5280	Phage-related minor tail protein	NA