UHGV-0456546

Genome information

vOTU vOTU-020753

Genome length 29,528 bps

CDS count 45

Completeness 69.13% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0456546
vOTU ID	vOTU-020753
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_4032
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.04
Jumbo phage	No

Genome content
Genome length	29,528 bps
GC content	55.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.71%
Average CDS length	598.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0456546_2	Structural annotation	PF19070	NA	NA
UHGV-0456546_3	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0456546_4	PHROG	phrog_2412	NA	unknown function
UHGV-0456546_4	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-0456546_4	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0456546_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0456546_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0456546_5	UniRef90	UniRef90_A0A3D3FC70	PBSX family phage terminase large subunit	NA
UHGV-0456546_5	eggNOG-mapper	936375.HMPREF1152_1069	Phage terminase, large subunit, PBSX family	NA
UHGV-0456546_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0456546_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0456546_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0456546_5	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0456546_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0456546_6	UniRef90	UniRef90_A0A858BRS2	Phage portal protein	NA
UHGV-0456546_6	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0456546_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0456546_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0456546_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0456546_7	UniRef90	UniRef90_A0A2V2FIV7	Phage capsid protein	NA
UHGV-0456546_7	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0456546_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0456546_7	COG	COG2369	NA	NA
UHGV-0456546_7	Structural annotation	PF06152	NA	NA
UHGV-0456546_9	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0456546_9	UniRef90	UniRef90_UPI001F379BB0	phage scaffolding protein	NA
UHGV-0456546_9	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-0456546_9	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0456546_9	Structural annotation	PF06810	NA	NA
UHGV-0456546_10	PHROG	phrog_283	major head protein	head and packaging
UHGV-0456546_10	UniRef90	UniRef90_A0A1C6I0L7	p22 coat protein-gene protein 5	NA
UHGV-0456546_10	eggNOG-mapper	1499683.CCFF01000014_gene3908	P22 coat protein - gene protein 5	NA
UHGV-0456546_10	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0456546_10	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0456546_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0456546_11	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0456546_12	PHROG	phrog_3366	NA	unknown function
UHGV-0456546_12	eggNOG-mapper	645991.Sgly_0343	NA	NA
UHGV-0456546_12	Pfam	PF20536	NA	DUF6751
UHGV-0456546_12	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0456546_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0456546_13	UniRef90	UniRef90_UPI0011781EF8	minor capsid protein	NA
UHGV-0456546_13	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0456546_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0456546_13	Structural annotation	PF11114	NA	NA
UHGV-0456546_14	PHROG	phrog_3266	tail completion	connector
UHGV-0456546_14	eggNOG-mapper	411490.ANACAC_00773	NA	NA
UHGV-0456546_14	Structural annotation	PF12691	NA	NA
UHGV-0456546_15	PHROG	phrog_3099	NA	unknown function
UHGV-0456546_15	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0456546_15	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0456546_16	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0456546_16	UniRef90	UniRef90_A0A0V8QIT3	Rha family transcriptional regulator	NA
UHGV-0456546_16	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0456546_16	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0456546_16	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0456546_16	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0456546_16	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0456546_17	PHROG	phrog_11299	NA	unknown function
UHGV-0456546_17	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0456546_17	Structural annotation	PF10666	NA	NA
UHGV-0456546_18	PHROG	phrog_706	NA	unknown function
UHGV-0456546_18	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0456546_18	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0456546_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0456546_18	Structural annotation	PF06854	NA	NA
UHGV-0456546_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0456546_20	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0456546_20	COG	COG1511	NA	NA
UHGV-0456546_20	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0456546_21	PHROG	phrog_1194	NA	unknown function
UHGV-0456546_21	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0456546_21	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0456546_22	PHROG	phrog_13879	NA	unknown function
UHGV-0456546_22	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0456546_22	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0456546_23	PHROG	phrog_18725	NA	unknown function
UHGV-0456546_23	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0456546_25	UniRef90	UniRef90_UPI001D07CA50	acyl carrier protein	NA
UHGV-0456546_25	eggNOG-mapper	1297617.JPJD01000014_gene875	NA	NA
UHGV-0456546_25	Structural annotation	PF14301	NA	NA
UHGV-0456546_26	PHROG	phrog_20274	NA	unknown function
UHGV-0456546_26	UniRef90	UniRef90_UPI001C3F12B9	putative ABC transporter permease	NA
UHGV-0456546_26	eggNOG-mapper	657322.FPR_21900	NA	NA
UHGV-0456546_26	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0456546_26	COG	COG4905	NA	NA
UHGV-0456546_26	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0456546_27	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0456546_27	PHROG	phrog_819	tail protein	tail
UHGV-0456546_27	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0456546_28	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0456546_28	PHROG	phrog_435	endolysin	lysis
UHGV-0456546_28	UniRef90	UniRef90_A0A6A8VJA4	MurNAc-LAA domain-containing protein	NA
UHGV-0456546_28	eggNOG-mapper	1121344.JHZO01000003_gene744	Ami_3	NA
UHGV-0456546_28	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0456546_28	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0456546_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0456546_28	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0456546_29	PHROG	phrog_263	holin	lysis
UHGV-0456546_29	UniRef90	UniRef90_UPI00067ED4AA	phage holin	NA
UHGV-0456546_29	eggNOG-mapper	1297617.JPJD01000099_gene2175	SPP1 phage holin	NA
UHGV-0456546_29	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0456546_29	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0456546_29	Structural annotation	PF04688	NA	NA
UHGV-0456546_30	PHROG	phrog_937	hemolysin	other
UHGV-0456546_30	eggNOG-mapper	1297617.JPJD01000099_gene2176	NA	NA
UHGV-0456546_31	KOfam	K03071	secB; preprotein translocase subunit SecB	NA
UHGV-0456546_31	PHROG	phrog_21664	NA	unknown function
UHGV-0456546_31	UniRef90	UniRef90_A0A6N3A9W6	Preprotein translocase subunit SecB	NA
UHGV-0456546_31	eggNOG-mapper	1280689.AUJC01000016_gene85	protein tetramerization	NA
UHGV-0456546_31	Pfam	PF02556	Preprotein translocase subunit SecB	SecB
UHGV-0456546_31	COG	COG1952	Preprotein translocase subunit SecB	NA
UHGV-0456546_31	Structural annotation	PF02556, MF_00821, NF004391, COG1952	NA	NA
UHGV-0456546_33	PHROG	phrog_14664	NA	unknown function
UHGV-0456546_33	Structural annotation	PF00644, COG5654	NA	NA
UHGV-0456546_34	KOfam	K14059	int; integrase	NA
UHGV-0456546_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0456546_34	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-0456546_34	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0456546_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0456546_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0456546_34	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0456546_35	PHROG	phrog_33872	NA	unknown function
UHGV-0456546_37	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0456546_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0456546_37	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0456546_37	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0456546_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0456546_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0456546_37	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0456546_39	Structural annotation	PF09639, TIGR04176	NA	NA
UHGV-0456546_44	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0456546_44	UniRef90	UniRef90_A0A1C6J857	Transglycosylase SLT domain	NA
UHGV-0456546_44	eggNOG-mapper	1121413.JMKT01000012_gene610	PFAM Lytic transglycosylase catalytic	NA
UHGV-0456546_44	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0456546_44	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA