UHGV-0461573

Genome information

vOTU vOTU-019594

Genome length 42,455 bps

CDS count 70

Completeness 55.99% (medium-quality)

geNomad score 0.9666

Prediction confidence Confident

Genome information
Genome ID	UHGV-0461573
vOTU ID	vOTU-019594
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_1694
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9666
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.63
Jumbo phage	No

Genome content
Genome length	42,455 bps
GC content	43.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	84.05%
Average CDS length	511.63 bps
tRNA count	6
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0461573_1	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0461573_1	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0461573_1	UniRef90	UniRef90_UPI000466EBF7	DNA adenine methylase	NA
UHGV-0461573_1	eggNOG-mapper	411902.CLOBOL_05671	COG COG0338 Site-specific DNA methylase	NA
UHGV-0461573_1	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0461573_1	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0461573_1	COG	COG0338	DNA-adenine methylase	NA
UHGV-0461573_1	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0461573_4	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0461573_4	PHROG	phrog_200	lipoprotein	other
UHGV-0461573_4	UniRef90	UniRef90_UPI001D07153E	prohibitin family protein	NA
UHGV-0461573_4	eggNOG-mapper	610130.Closa_0721	prohibitin homologues	NA
UHGV-0461573_4	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0461573_4	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0461573_4	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0461573_8	PHROG	phrog_30343	NA	unknown function
UHGV-0461573_8	UniRef90	UniRef90_A0A415ZYR4	N-acetyltransferase	NA
UHGV-0461573_8	eggNOG-mapper	641107.CDLVIII_1322	NA	NA
UHGV-0461573_8	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0461573_9	PHROG	phrog_2045	NA	unknown function
UHGV-0461573_9	UniRef90	UniRef90_UPI0004650E1C	NA	NA
UHGV-0461573_9	eggNOG-mapper	1235800.C819_00502	NA	NA
UHGV-0461573_9	Pfam	PF07505	NA	DUF5131
UHGV-0461573_9	COG	COG4422	NA	NA
UHGV-0461573_9	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-0461573_10	PHROG	phrog_25176	NA	unknown function
UHGV-0461573_10	eggNOG-mapper	397290.C810_01476	NA	NA
UHGV-0461573_14	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0461573_15	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0461573_15	PHROG	phrog_11958	NA	unknown function
UHGV-0461573_15	UniRef90	UniRef90_UPI00046769C7	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0461573_15	eggNOG-mapper	1235799.C818_02375	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0461573_15	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0461573_15	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0461573_15	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0461573_16	UniRef90	UniRef90_UPI001D06401E	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0461573_16	eggNOG-mapper	1235799.C818_02374	mRNA binding	NA
UHGV-0461573_16	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0461573_16	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0461573_17	UniRef90	UniRef90_UPI0018A9E325	helix-turn-helix domain-containing protein	NA
UHGV-0461573_17	eggNOG-mapper	397291.C804_01058	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0461573_17	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0461573_17	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0461573_18	AcrCatalog	cluster_11486	NA	NA
UHGV-0461573_21	PHROG	phrog_10415	NA	unknown function
UHGV-0461573_21	UniRef90	UniRef90_A0A1I0GLJ0	LPD29 domain-containing protein	NA
UHGV-0461573_21	eggNOG-mapper	500632.CLONEX_04013	DnaJ molecular chaperone homology domain	NA
UHGV-0461573_21	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0461573_21	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0461573_21	Structural annotation	PF18847	NA	NA
UHGV-0461573_22	eggNOG-mapper	443144.GM21_0785	NA	NA
UHGV-0461573_25	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0461573_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0461573_25	UniRef90	UniRef90_UPI00046333B4	tyrosine-type recombinase/integrase	NA
UHGV-0461573_25	eggNOG-mapper	679935.Alfi_1809	Belongs to the 'phage' integrase family	NA
UHGV-0461573_25	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0461573_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0461573_25	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0461573_25	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0461573_26	UniRef90	UniRef90_UPI0004BC22A9	NA	NA
UHGV-0461573_26	eggNOG-mapper	457421.CBFG_05212	NA	NA
UHGV-0461573_26	Pfam	PF14199	NA	DUF4317
UHGV-0461573_26	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0461573_29	UniRef90	UniRef90_UPI00046712EE	NA	NA
UHGV-0461573_29	Pfam	PF04448	NA	DUF551
UHGV-0461573_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0461573_34	UniRef90	UniRef90_UPI001897DFA1	phosphoadenosine phosphosulfate reductase	NA
UHGV-0461573_34	eggNOG-mapper	742733.HMPREF9469_01838	sulfate reduction	NA
UHGV-0461573_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0461573_34	Structural annotation	PF01507, MF_00063, TIGR02055, COG0175	NA	NA
UHGV-0461573_35	PHROG	phrog_874	NA	unknown function
UHGV-0461573_35	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0461573_35	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0461573_35	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0461573_36	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0461573_36	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0461573_36	UniRef90	UniRef90_UPI00046721E6	DNA adenine methylase	NA
UHGV-0461573_36	eggNOG-mapper	610130.Closa_0735	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0461573_36	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0461573_36	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0461573_36	COG	COG0338	DNA-adenine methylase	NA
UHGV-0461573_36	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0461573_37	KOfam	K04769	spoVT; AbrB family transcriptional regulator, stage V sporulation protein T	NA
UHGV-0461573_37	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0461573_37	UniRef90	UniRef90_UPI0004B58D8A	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0461573_37	eggNOG-mapper	1298920.KI911353_gene2736	SpoVT / AbrB like domain	NA
UHGV-0461573_37	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0461573_37	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0461573_37	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0461573_37	Structural annotation	PF02381, TIGR01439, COG2002	NA	NA
UHGV-0461573_38	PHROG	phrog_11941	NA	unknown function
UHGV-0461573_38	eggNOG-mapper	1501230.ET33_14055	NA	NA
UHGV-0461573_38	Structural annotation	PF08169, TIGR02097	NA	NA
UHGV-0461573_40	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0461573_40	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0461573_40	UniRef90	UniRef90_UPI000467BA35	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0461573_40	eggNOG-mapper	742765.HMPREF9457_03403	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0461573_40	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0461573_40	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0461573_40	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0461573_41	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0461573_41	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0461573_41	UniRef90	UniRef90_UPI0004679E66	AAA family ATPase	NA
UHGV-0461573_41	eggNOG-mapper	1298920.KI911353_gene2713	Participates in initiation and elongation during chromosome replication	NA
UHGV-0461573_41	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0461573_41	COG	COG0305	Replicative DNA helicase	NA
UHGV-0461573_41	Structural annotation	PF03796, PF16793, MF_01498, MF_00700, NF004109, NF040562, COG0305, COG1467	NA	NA
UHGV-0461573_42	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0461573_42	UniRef90	UniRef90_A0A2H4JF78	Putative DNA replication protein	NA
UHGV-0461573_42	eggNOG-mapper	1391647.AVSV01000022_gene2531	DnaD domain protein	NA
UHGV-0461573_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0461573_42	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0461573_44	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0461573_44	eggNOG-mapper	1298920.KI911353_gene2715	NA	NA
UHGV-0461573_44	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0461573_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0461573_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0461573_45	UniRef90	UniRef90_UPI0005569316	single-stranded DNA-binding protein	NA
UHGV-0461573_45	eggNOG-mapper	457421.CBFG_04823	Single-strand binding protein family	NA
UHGV-0461573_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0461573_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0461573_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0461573_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0461573_45	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0461573_46	PHROG	phrog_31524	NA	unknown function
UHGV-0461573_46	UniRef90	UniRef90_UPI001D07FAC2	radical SAM protein	NA
UHGV-0461573_46	eggNOG-mapper	1298920.KI911353_gene2721	NA	NA
UHGV-0461573_46	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-0461573_46	Structural annotation	PF13353, MF_01225_A, TIGR02668, COG0535	NA	NA
UHGV-0461573_48	PHROG	phrog_2598	NA	unknown function
UHGV-0461573_48	UniRef90	UniRef90_UPI000464CD27	NA	NA
UHGV-0461573_48	eggNOG-mapper	272562.CA_C1168	NA	NA
UHGV-0461573_48	PADLOC	REase_II_00020	Type II restriction enzyme	RM
UHGV-0461573_48	Pfam	PF03235	NA	DUF262
UHGV-0461573_48	COG	COG1479	NA	NA
UHGV-0461573_48	Structural annotation	PF03235, MF_02015, NF041060, COG1479	NA	NA
UHGV-0461573_49	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0461573_49	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0461573_49	UniRef90	UniRef90_UPI001D087845	MBL fold metallo-hydrolase	NA
UHGV-0461573_49	eggNOG-mapper	1196322.A370_04250	Metallo-beta-lactamase superfamily	NA
UHGV-0461573_49	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0461573_49	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0461573_49	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0461573_52	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0461573_52	eggNOG-mapper	665959.HMPREF1013_05342	NA	NA
UHGV-0461573_53	PHROG	phrog_2650	NA	unknown function
UHGV-0461573_53	eggNOG-mapper	1406785.U5PTZ8_9CAUD	NA	NA
UHGV-0461573_59	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0461573_59	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0461573_59	UniRef90	UniRef90_UPI000467188E	AAA family ATPase	NA
UHGV-0461573_59	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0461573_59	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0461573_59	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0461573_60	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0461573_60	PHROG	phrog_26861	NA	unknown function
UHGV-0461573_60	UniRef90	UniRef90_UPI001D099290	single-stranded DNA-binding protein	NA
UHGV-0461573_60	eggNOG-mapper	742735.HMPREF9467_01031	NA	NA
UHGV-0461573_60	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0461573_60	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0461573_60	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0461573_60	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0461573_64	UniRef90	UniRef90_UPI0004654DF5	helix-turn-helix domain-containing protein	NA
UHGV-0461573_64	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0461573_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0461573_64	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0461573_65	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0461573_65	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0461573_65	UniRef90	UniRef90_UPI0004B974D1	XRE family transcriptional regulator	NA
UHGV-0461573_65	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-0461573_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0461573_65	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0461573_65	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0461573_65	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, NF041951, COG2932	NA	NA
UHGV-0461573_66	UniRef90	UniRef90_UPI001C00A8DA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0461573_66	eggNOG-mapper	445972.ANACOL_03322	IrrE N-terminal-like domain	NA
UHGV-0461573_66	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0461573_66	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0461573_67	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0461573_67	PHROG	phrog_95	integrase	integration and excision
UHGV-0461573_67	UniRef90	UniRef90_UPI001D0672EC	recombinase family protein	NA
UHGV-0461573_67	eggNOG-mapper	883156.HMPREF9282_01201	Resolvase, N terminal domain	NA
UHGV-0461573_67	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0461573_67	Pfam	PF07508	Recombinase	Recombinase
UHGV-0461573_67	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0461573_67	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0461573_67	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0461573_68	KOfam	K10979	ku; DNA end-binding protein Ku	NA
UHGV-0461573_68	PHROG	phrog_4873	Ku-like DNA end binding	DNA, RNA and nucleotide metabolism
UHGV-0461573_68	UniRef90	UniRef90_A0A0U5PRI7	Non-homologous end joining protein Ku	NA
UHGV-0461573_68	eggNOG-mapper	742740.HMPREF9474_01420	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD	NA
UHGV-0461573_68	Pfam	PF02735	Ku70/Ku80 beta-barrel domain	Ku
UHGV-0461573_68	NCBIFam	TIGR02772.1	Ku protein	NA
UHGV-0461573_68	COG	COG1273	Non-homologous end joining protein Ku, dsDNA break repair	NA
UHGV-0461573_68	HAMAP	MF_01875	Non-homologous end joining protein Ku [ku]	NA
UHGV-0461573_68	Structural annotation	PF02735, MF_01875, TIGR02772, COG1273	NA	NA
UHGV-0461573_69	KOfam	K01971	ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]	NA
UHGV-0461573_69	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0461573_69	UniRef90	UniRef90_R0AFD6	DNA ligase (ATP)	NA
UHGV-0461573_69	eggNOG-mapper	428125.CLOLEP_03534	PFAM ATP dependent DNA ligase	NA
UHGV-0461573_69	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-0461573_69	Pfam	PF04679	ATP dependent DNA ligase C terminal region	DNA_ligase_A_C
UHGV-0461573_69	COG	COG1793	ATP-dependent DNA ligase	NA
UHGV-0461573_69	Structural annotation	PF01068, PF04679, MF_00407, TIGR02779, COG1793	NA	NA
UHGV-0461573_70	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0461573_70	UniRef90	UniRef90_UPI000466CBAB	helix-turn-helix transcriptional regulator	NA
UHGV-0461573_70	eggNOG-mapper	411459.RUMOBE_03566	NA	NA
UHGV-0461573_70	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0461573_70	Structural annotation	PF13443, NF041951, COG3655	NA	NA