UHGV-0468339

Genome information

vOTU vOTU-020624

Genome length 38,411 bps

CDS count 57

Completeness 87.75% (medium-quality)

geNomad score 0.9673

Prediction confidence Confident

Genome information
Genome ID	UHGV-0468339
vOTU ID	vOTU-020624
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	ERS743387\|NODE_67_length_38411_cov_45.809547
BioSample	SAMEA3444255
Country	Uganda
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9673
Virus hallmark genes (geNomad)	19
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.99
Jumbo phage	No

Genome content
Genome length	38,411 bps
GC content	36.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.25%
Average CDS length	631.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0468339_12	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0468339_12	Pfam	PF10097	NA	DUF2335
UHGV-0468339_14	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0468339_14	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0468339_14	UniRef90	UniRef90_F3QJB3	Peptidase S24-like protein	NA
UHGV-0468339_14	eggNOG-mapper	469610.HMPREF0189_01093	Peptidase S24-like	NA
UHGV-0468339_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0468339_14	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0468339_14	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0468339_14	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0468339_15	UniRef90	UniRef90_UPI001F39DB28	helix-turn-helix domain-containing protein	NA
UHGV-0468339_15	eggNOG-mapper	1266925.JHVX01000006_gene2048	NA	NA
UHGV-0468339_17	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0468339_17	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0468339_17	UniRef90	UniRef90_A0A7U3MFN3	DNA polymerase III epsilon subunit protein	NA
UHGV-0468339_17	eggNOG-mapper	556269.ACDQ01000008_gene1741	Exonuclease	NA
UHGV-0468339_17	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0468339_17	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0468339_17	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0468339_18	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0468339_18	Structural annotation	PF06530	NA	NA
UHGV-0468339_20	UniRef90	UniRef90_UPI001459C027	ATP-binding protein	NA
UHGV-0468339_20	eggNOG-mapper	243275.TDE_0229	sigma factor antagonist activity	NA
UHGV-0468339_20	Pfam	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c_3
UHGV-0468339_20	COG	COG2172	Anti-sigma regulatory factor (Ser/Thr protein kinase)	NA
UHGV-0468339_20	Structural annotation	MF_00505, NF003555, COG0323	NA	NA
UHGV-0468339_21	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0468339_22	PHROG	phrog_824	NA	unknown function
UHGV-0468339_22	UniRef90	UniRef90_UPI000375638B	VRR-NUC domain-containing protein	NA
UHGV-0468339_22	eggNOG-mapper	1121935.AQXX01000130_gene2430	VRR-NUC domain	NA
UHGV-0468339_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0468339_22	Structural annotation	PF08774	NA	NA
UHGV-0468339_23	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0468339_23	PHROG	phrog_7	endolysin	lysis
UHGV-0468339_23	UniRef90	UniRef90_A0A662Z686	Lysozyme	NA
UHGV-0468339_23	eggNOG-mapper	10753.B7SSN6_BPNF	Phage lysozyme	NA
UHGV-0468339_23	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0468339_23	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0468339_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0468339_28	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0468339_28	UniRef90	UniRef90_R5EZA4	Restriction endonuclease	NA
UHGV-0468339_28	eggNOG-mapper	1123302.KB904184_gene997	Endonuclease	NA
UHGV-0468339_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0468339_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0468339_28	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0468339_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0468339_29	UniRef90	UniRef90_R5EL15	Putative phage terminase small subunit protein	NA
UHGV-0468339_29	eggNOG-mapper	380358.XALC_2399	Phage terminase, small subunit	NA
UHGV-0468339_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0468339_29	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0468339_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0468339_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0468339_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0468339_30	UniRef90	UniRef90_A0A2S4LXH4	Phage terminase large subunit-like protein	NA
UHGV-0468339_30	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0468339_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0468339_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0468339_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0468339_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0468339_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0468339_31	UniRef90	UniRef90_A0A3D4G7C4	Phage portal protein	NA
UHGV-0468339_31	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0468339_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0468339_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0468339_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0468339_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0468339_32	KOfam	K06904	NA	NA
UHGV-0468339_32	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0468339_32	UniRef90	UniRef90_A0A6L6YJ61	HK97 family phage prohead protease	NA
UHGV-0468339_32	eggNOG-mapper	2342.SOPEG_1843	Prohead protease	NA
UHGV-0468339_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0468339_32	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0468339_32	COG	COG3740	Phage head maturation protease	NA
UHGV-0468339_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0468339_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0468339_33	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-0468339_33	eggNOG-mapper	1415780.JPOG01000001_gene1580	Phage capsid family	NA
UHGV-0468339_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0468339_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0468339_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0468339_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0468339_34	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0468339_34	UniRef90	UniRef90_A0A6L6YIV6	Phage gp6-like head-tail connector protein	NA
UHGV-0468339_34	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0468339_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0468339_34	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0468339_35	PHROG	phrog_25	head closure Hc1	connector
UHGV-0468339_35	UniRef90	UniRef90_A0A7X2CI04	Phage head closure protein	NA
UHGV-0468339_35	eggNOG-mapper	175950.Q8HAC9_9CAUD	Phage head-tail joining protein	NA
UHGV-0468339_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0468339_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0468339_37	PHROG	phrog_209	portal protein	head and packaging
UHGV-0468339_37	eggNOG-mapper	279714.FuraDRAFT_0282	NA	NA
UHGV-0468339_37	Structural annotation	PF09646	NA	NA
UHGV-0468339_38	PHROG	phrog_165	tail sheath	tail
UHGV-0468339_38	UniRef90	UniRef90_R5ELR7	Mu tail sheath family protein	NA
UHGV-0468339_38	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0468339_38	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0468339_38	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0468339_38	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0468339_38	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0468339_39	PHROG	phrog_185	tail tube protein	tail
UHGV-0468339_39	UniRef90	UniRef90_A0A2D0IGM7	Phage tail protein	NA
UHGV-0468339_39	eggNOG-mapper	343509.SG0718	phage tail	NA
UHGV-0468339_39	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0468339_39	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0468339_40	eggNOG-mapper	1224136.AMFN01000003_gene3617	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0468339_40	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0468339_41	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0468339_41	UniRef90	UniRef90_A0A5C7NKL0	Phage tail tape measure protein (Fragment)	NA
UHGV-0468339_41	eggNOG-mapper	1122135.KB893169_gene2496	phage tail tape measure protein	NA
UHGV-0468339_41	COG	COG5412	Phage-related protein	NA
UHGV-0468339_41	Structural annotation	TIGR01760	NA	NA
UHGV-0468339_42	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0468339_42	UniRef90	UniRef90_R5EKZ8	DNA_circ_N domain-containing protein	NA
UHGV-0468339_42	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0468339_42	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0468339_42	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0468339_42	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0468339_46	PHROG	phrog_177	tail protein	tail
UHGV-0468339_46	UniRef90	UniRef90_UPI001F13B36D	baseplate protein	NA
UHGV-0468339_46	eggNOG-mapper	1150626.PHAMO_340063	Mu-like prophage tail protein	NA
UHGV-0468339_46	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0468339_46	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0468339_46	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0468339_47	UniRef90	UniRef90_R5EZ78	Prophage MuSo2	NA
UHGV-0468339_47	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0468339_47	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0468339_47	COG	COG4384	NA	NA
UHGV-0468339_48	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0468339_48	UniRef90	UniRef90_UPI000D82E41E	NA	NA
UHGV-0468339_48	eggNOG-mapper	1262914.BN533_01715	PAAR repeat-containing protein	NA
UHGV-0468339_48	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0468339_48	Pfam	PF19940	NA	DUF6402
UHGV-0468339_48	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-0468339_48	Structural annotation	PF19940, PF05488, NF033420, COG4104	NA	NA
UHGV-0468339_50	Structural annotation	PF20505, NF001460	NA	NA
UHGV-0468339_53	PHROG	phrog_180	tail protein	tail
UHGV-0468339_53	UniRef90	UniRef90_R5EKZ3	Mu-like prophage protein gp46	NA
UHGV-0468339_53	eggNOG-mapper	570967.JMLV01000018_gene455	Phage protein GP46	NA
UHGV-0468339_53	Pfam	PF07409	NA	GP46
UHGV-0468339_53	COG	COG4381	NA	NA
UHGV-0468339_53	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0468339_54	PHROG	phrog_6	baseplate protein	tail
UHGV-0468339_54	UniRef90	UniRef90_R5ELP9	Baseplate_J domain-containing protein	NA
UHGV-0468339_54	eggNOG-mapper	742821.HMPREF9464_01817	Baseplate J family protein	NA
UHGV-0468339_54	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0468339_54	COG	COG3299	NA	NA
UHGV-0468339_54	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0468339_55	PHROG	phrog_203	tail protein	tail
UHGV-0468339_55	UniRef90	UniRef90_A0A068Z040	YmfQ family protein	NA
UHGV-0468339_55	eggNOG-mapper	883.DvMF_0750	NA	NA
UHGV-0468339_55	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0468339_55	COG	COG3778	NA	NA
UHGV-0468339_55	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0468339_56	PHROG	phrog_523	tail collar fiber protein	tail
UHGV-0468339_56	UniRef90	UniRef90_A0A354WRB2	Collar domain-containing protein	NA
UHGV-0468339_56	eggNOG-mapper	526218.Sterm_1437	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0468339_56	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0468339_56	Structural annotation	PF07484, COG4675	NA	NA