UHGV-0469885

Genome information

Genome length 37,343 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0469885
vOTU ID	vOTU-065484
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_2816
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.52
Jumbo phage	No

Genome content
Genome length	37,343 bps
GC content	50.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.69%
Average CDS length	682.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0469885_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0469885_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0469885_1	UniRef90	UniRef90_A0A0J9CFC3	HTH cro/C1-type domain-containing protein	NA
UHGV-0469885_1	eggNOG-mapper	742733.HMPREF9469_01855	Helix-turn-helix XRE-family like proteins	NA
UHGV-0469885_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0469885_1	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0469885_1	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0469885_2	PHROG	phrog_87	metallo-protease	other
UHGV-0469885_2	UniRef90	UniRef90_A0A2T3F4U5	Peptidase_M78 domain-containing protein	NA
UHGV-0469885_2	eggNOG-mapper	742733.HMPREF9469_01856	NA	NA
UHGV-0469885_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0469885_3	PHROG	phrog_7854	endolysin	lysis
UHGV-0469885_3	eggNOG-mapper	1304866.K413DRAFT_4757	cell wall binding	NA
UHGV-0469885_3	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0469885_3	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0469885_4	PHROG	phrog_7115	NA	unknown function
UHGV-0469885_4	UniRef90	UniRef90_A0A2T3F4V8	Cytoplasmic protein	NA
UHGV-0469885_4	eggNOG-mapper	397288.C806_00133	Bacterial PH domain	NA
UHGV-0469885_4	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0469885_4	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0469885_5	KOfam	K14059	int; integrase	NA
UHGV-0469885_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0469885_5	UniRef90	UniRef90_A0A416L7T9	Integrase	NA
UHGV-0469885_5	eggNOG-mapper	411460.RUMTOR_02457	NA	NA
UHGV-0469885_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0469885_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0469885_5	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0469885_6	PHROG	phrog_14030	NA	unknown function
UHGV-0469885_6	UniRef90	UniRef90_UPI001F3A7341	SH3 domain-containing protein	NA
UHGV-0469885_6	eggNOG-mapper	742741.HMPREF9475_00446	NA	NA
UHGV-0469885_6	Structural annotation	PF19127	NA	NA
UHGV-0469885_7	PHROG	phrog_199	holin	lysis
UHGV-0469885_7	UniRef90	UniRef90_A0A2T3F3A5	Holin	NA
UHGV-0469885_7	eggNOG-mapper	742740.HMPREF9474_04290	Bacteriophage holin family	NA
UHGV-0469885_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0469885_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0469885_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0469885_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0469885_8	UniRef90	UniRef90_A0A3E2U4U3	XkdX family protein	NA
UHGV-0469885_8	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0469885_8	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0469885_9	PHROG	phrog_12931	NA	unknown function
UHGV-0469885_9	eggNOG-mapper	742733.HMPREF9469_01800	NA	NA
UHGV-0469885_10	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0469885_10	PHROG	phrog_819	tail protein	tail
UHGV-0469885_10	UniRef90	UniRef90_A0A7U9JV09	Protein with collagen triple helix repeats	NA
UHGV-0469885_10	eggNOG-mapper	1304866.K413DRAFT_3052	Collagen triple helix repeat (20 copies)	NA
UHGV-0469885_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0469885_10	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0469885_11	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0469885_11	PHROG	phrog_8745	tail fiber protein	tail
UHGV-0469885_11	eggNOG-mapper	1304866.K413DRAFT_3051	NA	NA
UHGV-0469885_11	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0469885_12	PHROG	phrog_3558	tail protein	tail
UHGV-0469885_12	UniRef90	UniRef90_A0A2T3EZH1	Prophage_tail domain-containing protein	NA
UHGV-0469885_12	eggNOG-mapper	610130.Closa_0754	NA	NA
UHGV-0469885_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0469885_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0469885_12	COG	COG4926	Phage-related protein	NA
UHGV-0469885_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0469885_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0469885_13	UniRef90	UniRef90_A0A2T3EZG0	MtfA protein	NA
UHGV-0469885_13	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0469885_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0469885_13	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0469885_14	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0469885_14	UniRef90	UniRef90_A0A2T3EZI8	PhageMin_Tail domain-containing protein	NA
UHGV-0469885_14	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-0469885_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0469885_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0469885_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0469885_16	PHROG	phrog_706	NA	unknown function
UHGV-0469885_16	UniRef90	UniRef90_UPI001D038340	bacteriophage Gp15 family protein	NA
UHGV-0469885_16	eggNOG-mapper	935836.JAEL01000086_gene44	Bacteriophage Gp15 protein	NA
UHGV-0469885_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0469885_16	Structural annotation	PF06854	NA	NA
UHGV-0469885_17	Structural annotation	PF10666	NA	NA
UHGV-0469885_18	PHROG	phrog_820	major tail protein	tail
UHGV-0469885_18	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0469885_18	eggNOG-mapper	665959.HMPREF1013_00194	domain, Protein	NA
UHGV-0469885_18	COG	COG5492	NA	NA
UHGV-0469885_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0469885_19	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0469885_19	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0469885_19	Structural annotation	PF12691	NA	NA
UHGV-0469885_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0469885_20	eggNOG-mapper	1295642.H839_08329	Minor capsid protein	NA
UHGV-0469885_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0469885_21	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0469885_21	UniRef90	UniRef90_UPI001DCE9966	minor capsid protein	NA
UHGV-0469885_21	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-0469885_21	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0469885_21	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0469885_21	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0469885_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0469885_22	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0469885_22	eggNOG-mapper	1231057.AMGD01000018_gene3617	NA	NA
UHGV-0469885_23	PHROG	phrog_212	major head protein	head and packaging
UHGV-0469885_23	UniRef90	UniRef90_A0A2T3EZI1	Phage capsid protein	NA
UHGV-0469885_23	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-0469885_23	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0469885_24	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0469885_24	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0469885_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0469885_26	UniRef90	UniRef90_UPI001D2C4106	phage minor capsid protein	NA
UHGV-0469885_26	eggNOG-mapper	1295642.H839_08294	Phage minor capsid protein 2	NA
UHGV-0469885_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0469885_26	COG	COG2369	NA	NA
UHGV-0469885_26	Structural annotation	PF06152	NA	NA
UHGV-0469885_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0469885_27	UniRef90	UniRef90_UPI001D71E5F8	phage portal protein	NA
UHGV-0469885_27	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0469885_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0469885_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0469885_28	PHROG	phrog_1090	NA	unknown function
UHGV-0469885_28	eggNOG-mapper	1305708.M9Q2L4_9CAUD	NA	NA
UHGV-0469885_28	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA
UHGV-0469885_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0469885_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0469885_30	UniRef90	UniRef90_A0A2T3EZG6	PBSX family phage terminase large subunit	NA
UHGV-0469885_30	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0469885_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0469885_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0469885_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0469885_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0469885_31	PHROG	phrog_2412	NA	unknown function
UHGV-0469885_31	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0469885_31	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0469885_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0469885_32	UniRef90	UniRef90_A0A174EB71	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0469885_32	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-0469885_32	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0469885_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0469885_32	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0469885_33	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0469885_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0469885_33	UniRef90	UniRef90_C0CSR1	Site-specific recombinase, phage integrase family	NA
UHGV-0469885_33	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-0469885_33	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0469885_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0469885_33	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0469885_33	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0469885_35	UniRef90	UniRef90_UPI00067F0C72	NA	NA
UHGV-0469885_40	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0469885_40	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0469885_40	UniRef90	UniRef90_A8RGI9	Helicase ATP-binding domain-containing protein	NA
UHGV-0469885_40	eggNOG-mapper	411902.CLOBOL_00156	COG COG0553 Superfamily II DNA RNA helicases, SNF2 family	NA
UHGV-0469885_40	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0469885_40	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0469885_40	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0469885_40	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-0469885_41	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0469885_41	UniRef90	UniRef90_A8RGJ0	VRR-NUC domain-containing protein	NA
UHGV-0469885_41	eggNOG-mapper	411902.CLOBOL_00157	COG NOG18350 non supervised orthologous group	NA
UHGV-0469885_41	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0469885_42	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0469885_42	UniRef90	UniRef90_A0A4Q7PPS0	Virulence-associated protein E	NA
UHGV-0469885_42	eggNOG-mapper	411902.CLOBOL_02544	Virulence-associated protein E	NA
UHGV-0469885_42	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0469885_42	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0469885_42	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0469885_43	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0469885_43	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0469885_43	UniRef90	UniRef90_A8RPR8	POLAc domain-containing protein	NA
UHGV-0469885_43	eggNOG-mapper	411902.CLOBOL_02545	COG COG0749 DNA polymerase I - 3-5 exonuclease and polymerase domains	NA
UHGV-0469885_43	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0469885_43	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0469885_43	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0469885_44	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0469885_44	UniRef90	UniRef90_A0A2S1QKX0	NA	NA
UHGV-0469885_44	eggNOG-mapper	1321782.HMPREF1986_02251	NA	NA
UHGV-0469885_44	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0469885_44	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0469885_45	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0469885_45	UniRef90	UniRef90_A0A5B9YEW0	NA	NA
UHGV-0469885_45	eggNOG-mapper	411902.CLOBOL_02547	COG NOG07892 non supervised orthologous group	NA
UHGV-0469885_45	Pfam	PF10926	NA	DUF2800
UHGV-0469885_45	COG	COG2887	RecB family exonuclease	NA
UHGV-0469885_45	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0469885_46	PHROG	phrog_408	NA	unknown function
UHGV-0469885_46	UniRef90	UniRef90_UPI000F52A0D6	DNA ligase	NA
UHGV-0469885_46	eggNOG-mapper	1286171.EAL2_c19960	NA	NA
UHGV-0469885_47	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0469885_47	UniRef90	UniRef90_A0A3E2VQY4	PC4 domain-containing protein	NA
UHGV-0469885_47	eggNOG-mapper	411902.CLOBOL_02549	Transcriptional Coactivator p15 (PC4)	NA
UHGV-0469885_47	COG	COG4443	NA	NA
UHGV-0469885_47	Structural annotation	COG4443	NA	NA
UHGV-0469885_51	PHROG	phrog_6058	NA	unknown function
UHGV-0469885_51	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0469885_51	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0469885_51	Structural annotation	PF12728, NF040990	NA	NA