UHGV-0471551

Genome information

Genome length 28,068 bps

CDS count 42

Completeness 76.65% (medium-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0471551
vOTU ID	vOTU-017861
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_4225
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.15
Jumbo phage	No

Genome content
Genome length	28,068 bps
GC content	42.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	89.62%
Average CDS length	602.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0471551_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0471551_1	UniRef90	UniRef90_A0A174XWB0	Phage terminase, large subunit	NA
UHGV-0471551_1	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0471551_1	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0471551_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0471551_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0471551_1	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0471551_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-0471551_2	UniRef90	UniRef90_A0A174XIL2	Prophage lambdaBa04, portal protein	NA
UHGV-0471551_2	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0471551_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0471551_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0471551_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0471551_3	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0471551_3	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0471551_3	UniRef90	UniRef90_A0A174XQS2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0471551_3	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0471551_3	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0471551_3	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0471551_3	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0471551_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-0471551_4	UniRef90	UniRef90_UPI001898529C	phage major capsid protein	NA
UHGV-0471551_4	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0471551_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0471551_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0471551_4	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0471551_4	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0471551_5	PHROG	phrog_5223	neck protein	connector
UHGV-0471551_5	UniRef90	UniRef90_A0A174XSK5	NA	NA
UHGV-0471551_5	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0471551_5	Structural annotation	TIGR01560	NA	NA
UHGV-0471551_6	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0471551_6	UniRef90	UniRef90_A0A098AU87	Gp16_SPP1: putative phage head-tail adaptor	NA
UHGV-0471551_6	eggNOG-mapper	596315.HMPREF0634_0222	head-tail adaptor	NA
UHGV-0471551_6	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0471551_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0471551_7	Structural annotation	TIGR01725	NA	NA
UHGV-0471551_8	Structural annotation	PF06141	NA	NA
UHGV-0471551_9	PHROG	phrog_88	major tail protein	tail
UHGV-0471551_9	UniRef90	UniRef90_A0A174XIJ5	Phi13 family phage major tail protein	NA
UHGV-0471551_9	eggNOG-mapper	742740.HMPREF9474_04299	NA	NA
UHGV-0471551_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0471551_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0471551_12	PHROG	phrog_33680	NA	unknown function
UHGV-0471551_12	UniRef90	UniRef90_A0A174XMM8	Tail tape measure protein TP901 core region	NA
UHGV-0471551_12	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0471551_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0471551_12	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0471551_13	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0471551_13	UniRef90	UniRef90_UPI00189CF998	DNRLRE domain-containing protein	NA
UHGV-0471551_13	eggNOG-mapper	796940.HMPREF9628_00134	NA	NA
UHGV-0471551_13	NCBIFam	NF033679.1	DNRLRE domain-containing protein	NA
UHGV-0471551_13	Structural annotation	PF06995, PF02010, MF_04116, TIGR02126, NF041431, COG3499, COG2372	NA	NA
UHGV-0471551_14	PHROG	phrog_26795	NA	unknown function
UHGV-0471551_14	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0471551_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0471551_15	PHROG	phrog_12764	NA	unknown function
UHGV-0471551_15	Structural annotation	PF01176, MF_00085, TIGR00523, COG0361	NA	NA
UHGV-0471551_16	UniRef90	UniRef90_UPI00189CFC02	BppU family phage baseplate upper protein	NA
UHGV-0471551_16	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0471551_17	PHROG	phrog_16164	NA	unknown function
UHGV-0471551_17	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0471551_17	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0471551_18	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0471551_18	PHROG	phrog_819	tail protein	tail
UHGV-0471551_18	UniRef90	UniRef90_A0A7G5N2U2	Collagen-like protein	NA
UHGV-0471551_18	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0471551_18	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0471551_18	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0471551_24	Pfam	PF21732	NA	DUF6864
UHGV-0471551_24	Structural annotation	PF21732	NA	NA
UHGV-0471551_26	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-0471551_27	Structural annotation	NF040910	NA	NA
UHGV-0471551_28	PHROG	phrog_199	holin	lysis
UHGV-0471551_28	UniRef90	UniRef90_UPI00164E24AF	phage holin family protein	NA
UHGV-0471551_28	eggNOG-mapper	742740.HMPREF9474_04290	Bacteriophage holin family	NA
UHGV-0471551_28	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0471551_28	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0471551_28	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0471551_28	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0471551_29	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0471551_29	PHROG	phrog_3088	amidase	lysis
UHGV-0471551_29	UniRef90	UniRef90_A0A174XN03	Putative N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0471551_29	eggNOG-mapper	1151292.QEW_0991	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0471551_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0471551_29	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0471551_29	Structural annotation	PF01510, PF19127, MF_04111, NF008758, TIGR04035, COG5632	NA	NA
UHGV-0471551_30	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0471551_30	UniRef90	UniRef90_D3AIX7	Bro-N domain-containing protein	NA
UHGV-0471551_30	eggNOG-mapper	397290.C810_01420	BRO family, N-terminal domain	NA
UHGV-0471551_30	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0471551_30	COG	COG3617	Prophage antirepressor	NA
UHGV-0471551_30	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0471551_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0471551_31	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0471551_31	UniRef90	UniRef90_A0A413LAM0	XRE family transcriptional regulator	NA
UHGV-0471551_31	eggNOG-mapper	1304866.K413DRAFT_1516	Helix-turn-helix XRE-family like proteins	NA
UHGV-0471551_31	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0471551_31	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0471551_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0471551_31	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0471551_32	UniRef90	UniRef90_A0A174MCJ2	GNAT family acetyltransferase	NA
UHGV-0471551_33	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0471551_33	PHROG	phrog_95	integrase	integration and excision
UHGV-0471551_33	UniRef90	UniRef90_UPI000B855A4E	recombinase family protein	NA
UHGV-0471551_33	eggNOG-mapper	748224.HMPREF9436_01242	NA	NA
UHGV-0471551_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0471551_33	Pfam	PF07508	Recombinase	Recombinase
UHGV-0471551_33	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0471551_33	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0471551_33	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0471551_34	UniRef90	UniRef90_UPI00189D9B1A	zinc ribbon domain-containing protein	NA
UHGV-0471551_34	eggNOG-mapper	742740.HMPREF9474_04329	NA	NA
UHGV-0471551_36	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0471551_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0471551_36	UniRef90	UniRef90_A0A0F0CM42	Transcriptional repressor DicA	NA
UHGV-0471551_36	eggNOG-mapper	610130.Closa_0705	Helix-turn-helix XRE-family like proteins	NA
UHGV-0471551_36	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0471551_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0471551_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0471551_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0471551_40	PHROG	phrog_15768	NA	unknown function
UHGV-0471551_40	UniRef90	UniRef90_UPI000E525AC6	NA	NA
UHGV-0471551_40	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0471551_40	AcrCatalog	cluster_38323	NA	NA
UHGV-0471551_40	Pfam	PF19808	NA	DUF6291
UHGV-0471551_40	Structural annotation	PF19808	NA	NA
UHGV-0471551_41	PHROG	phrog_9804	NA	unknown function
UHGV-0471551_41	UniRef90	UniRef90_A0A174WNQ9	Loader and inhibitor of phage G40P	NA
UHGV-0471551_41	eggNOG-mapper	697281.Mahau_0086	Loader and inhibitor of phage G40P	NA
UHGV-0471551_41	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0471551_41	Structural annotation	PF11417	NA	NA