UHGV-0541876

Genome information

Genome length 23,475 bps

CDS count 31

Completeness 54.97% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0541876
vOTU ID	vOTU-033010
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	ERS743415\|NODE_43_length_23475_cov_6.257259
BioSample	SAMEA3444283
Country	Uganda
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.97
Jumbo phage	No

Genome content
Genome length	23,475 bps
GC content	38.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	89.87%
Average CDS length	683.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0541876_1	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0541876_1	UniRef90	UniRef90_D6KLE8	NA	NA
UHGV-0541876_1	eggNOG-mapper	1401067.HMPREF0872_03460	NA	NA
UHGV-0541876_1	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0541876_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0541876_1	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0541876_2	PHROG	phrog_29533	NA	unknown function
UHGV-0541876_3	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0541876_3	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0541876_3	UniRef90	UniRef90_F5KZL7	Lactamase_B domain-containing protein	NA
UHGV-0541876_3	eggNOG-mapper	1401067.HMPREF0872_03470	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0541876_3	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0541876_3	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0541876_3	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0541876_4	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0541876_4	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0541876_4	UniRef90	UniRef90_A0A811GJA5	Protein RecT	NA
UHGV-0541876_4	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-0541876_4	Pfam	PF03837	RecT family	RecT
UHGV-0541876_4	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0541876_4	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0541876_4	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0541876_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0541876_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0541876_5	UniRef90	UniRef90_A0A096BYG9	Phage antirepressor protein	NA
UHGV-0541876_5	eggNOG-mapper	1401067.HMPREF0872_03480	BRO family, N-terminal domain	NA
UHGV-0541876_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0541876_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0541876_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0541876_5	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0541876_6	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0541876_6	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0541876_6	UniRef90	UniRef90_A0A660M765	AAA_23 domain-containing protein	NA
UHGV-0541876_6	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-0541876_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0541876_6	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0541876_7	PHROG	phrog_16315	NA	unknown function
UHGV-0541876_7	UniRef90	UniRef90_UPI00040F6C65	PcfJ domain-containing protein	NA
UHGV-0541876_7	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-0541876_7	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0541876_7	Structural annotation	PF14284	NA	NA
UHGV-0541876_8	PHROG	phrog_29844	NA	unknown function
UHGV-0541876_9	PHROG	phrog_35266	NA	unknown function
UHGV-0541876_9	UniRef90	UniRef90_UPI001A614D00	choline-binding protein A	NA
UHGV-0541876_10	UniRef90	UniRef90_D6KLD9	Surface antigen (D15)	NA
UHGV-0541876_11	KOfam	K19232	btaE; hyaluronate-binding autotransporter adhesin	NA
UHGV-0541876_11	UniRef90	UniRef90_A0A134CAA5	Hep/Hag repeat protein	NA
UHGV-0541876_11	eggNOG-mapper	546273.VEIDISOL_00699	Hep Hag repeat protein	NA
UHGV-0541876_11	Pfam	PF05658	YadA head domain repeat (2 copies)	YadA_head
UHGV-0541876_11	Pfam	PF05662	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
UHGV-0541876_11	Pfam	PF03895	YadA-like membrane anchor domain	YadA_anchor
UHGV-0541876_11	COG	COG5295	Autotransporter adhesin	NA
UHGV-0541876_11	Structural annotation	PF03895, NF033478, COG5295	NA	NA
UHGV-0541876_13	UniRef90	UniRef90_A0A2S7ZHK6	DNA-binding protein	NA
UHGV-0541876_13	eggNOG-mapper	546273.VEIDISOL_00695	Helix-turn-helix domain	NA
UHGV-0541876_13	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0541876_13	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0541876_14	UniRef90	UniRef90_A0A2S7YZG3	DNA-binding protein	NA
UHGV-0541876_14	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0541876_14	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0541876_15	UniRef90	UniRef90_UPI0011B601E0	helix-turn-helix domain-containing protein	NA
UHGV-0541876_15	eggNOG-mapper	936589.HMPREF1521_1175	sequence-specific DNA binding	NA
UHGV-0541876_15	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0541876_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0541876_15	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0541876_16	UniRef90	UniRef90_U7UJZ6	SWIM-type domain-containing protein	NA
UHGV-0541876_16	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-0541876_16	Structural annotation	PF07106, MF_01911, NF000243, COG3682	NA	NA
UHGV-0541876_17	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0541876_17	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0541876_17	UniRef90	UniRef90_UPI001960DD2F	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0541876_17	eggNOG-mapper	1273103.NM10_02422	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0541876_17	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0541876_17	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0541876_17	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0541876_18	KOfam	K14059	int; integrase	NA
UHGV-0541876_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0541876_18	UniRef90	UniRef90_C4FP65	Site-specific recombinase, phage integrase family	NA
UHGV-0541876_18	eggNOG-mapper	546273.VEIDISOL_00689	Belongs to the 'phage' integrase family	NA
UHGV-0541876_18	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0541876_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0541876_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0541876_18	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0541876_19	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0541876_19	UniRef90	UniRef90_A0A134CAQ8	HTH_59 domain-containing protein	NA
UHGV-0541876_19	eggNOG-mapper	1128111.HMPREF0870_00986	NA	NA
UHGV-0541876_19	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0541876_19	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0541876_20	PHROG	phrog_18860	NA	unknown function
UHGV-0541876_21	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0541876_21	PHROG	phrog_435	endolysin	lysis
UHGV-0541876_21	UniRef90	UniRef90_W1WXV6	MurNAc-LAA domain-containing protein	NA
UHGV-0541876_21	eggNOG-mapper	546273.VEIDISOL_00739	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0541876_21	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0541876_21	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0541876_21	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0541876_22	PHROG	phrog_27828	NA	unknown function
UHGV-0541876_22	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0541876_22	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0541876_23	eggNOG-mapper	546273.VEIDISOL_00737	NA	NA
UHGV-0541876_24	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0541876_24	PHROG	phrog_22483	NA	unknown function
UHGV-0541876_24	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-0541876_24	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0541876_25	Structural annotation	PF21146, NF041425, COG5513	NA	NA
UHGV-0541876_27	Structural annotation	PF21611	NA	NA
UHGV-0541876_28	KOfam	K14059	int; integrase	NA
UHGV-0541876_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0541876_28	UniRef90	UniRef90_UPI00189C24A4	site-specific integrase	NA
UHGV-0541876_28	eggNOG-mapper	546273.VEIDISOL_00732	Belongs to the 'phage' integrase family	NA
UHGV-0541876_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0541876_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0541876_28	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0541876_28	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0541876_29	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0541876_29	UniRef90	UniRef90_UPI001CD44E8B	phage tail protein	NA
UHGV-0541876_29	eggNOG-mapper	1273103.NM10_08074	Phage tail-collar fibre protein	NA
UHGV-0541876_29	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0541876_29	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0541876_29	Structural annotation	PF12571	NA	NA
UHGV-0541876_30	PHROG	phrog_14404	baseplate protein	tail
UHGV-0541876_30	UniRef90	UniRef90_A0A134C9I1	Phage tail protein I-like protein	NA
UHGV-0541876_30	eggNOG-mapper	1273103.NM10_08069	Phage tail protein (Tail_P2_I)	NA
UHGV-0541876_30	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0541876_30	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0541876_30	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0541876_30	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0541876_31	UniRef90	UniRef90_D1ALM1	Baseplate_J domain-containing protein	NA
UHGV-0541876_31	eggNOG-mapper	1273103.NM10_08064	Baseplate J-like protein	NA
UHGV-0541876_31	COG	COG3948	Phage-related baseplate assembly protein	NA