UHGV-0636166

Genome information

vOTU vOTU-020413

Genome length 44,914 bps

CDS count 56

Completeness 71.43% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0636166
vOTU ID	vOTU-020413
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	ERS743426\|NODE_21_length_44914_cov_16.729865
BioSample	NA
Country	Uganda
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	1.61
Jumbo phage	No

Genome content
Genome length	44,914 bps
GC content	44.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.60%
Average CDS length	751.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0636166_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0636166_1	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0636166_1	eggNOG-mapper	742817.HMPREF9449_01778	Helicase C-terminal domain protein	NA
UHGV-0636166_1	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0636166_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0636166_1	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0636166_2	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0636166_3	PHROG	phrog_156	portal protein	head and packaging
UHGV-0636166_3	eggNOG-mapper	742817.HMPREF9449_01798	NA	NA
UHGV-0636166_3	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0636166_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0636166_5	UniRef90	UniRef90_A0A413BQF7	Terminase	NA
UHGV-0636166_5	eggNOG-mapper	1121098.HMPREF1534_01124	Mu-like prophage FluMu protein gp28	NA
UHGV-0636166_5	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0636166_5	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0636166_6	Structural annotation	PF01694, MF_01594, NF008155, COG0705	NA	NA
UHGV-0636166_8	PHROG	phrog_22323	NA	unknown function
UHGV-0636166_8	eggNOG-mapper	1227276.HMPREF9148_00160	NA	NA
UHGV-0636166_9	PHROG	phrog_26635	NA	unknown function
UHGV-0636166_9	UniRef90	UniRef90_UPI001C38231A	NA	NA
UHGV-0636166_9	eggNOG-mapper	1227276.HMPREF9148_00159	NA	NA
UHGV-0636166_9	Structural annotation	PF17236, MF_04133, TIGR01554, COG4834	NA	NA
UHGV-0636166_11	PHROG	phrog_22135	NA	unknown function
UHGV-0636166_11	eggNOG-mapper	679191.HMPREF9018_0450	NA	NA
UHGV-0636166_11	Structural annotation	PF17212	NA	NA
UHGV-0636166_15	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-0636166_16	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0636166_16	PHROG	phrog_822	amidase	lysis
UHGV-0636166_16	UniRef90	UniRef90_A0A374BXC5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0636166_16	eggNOG-mapper	888832.HMPREF9420_0424	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0636166_16	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0636166_16	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0636166_16	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0636166_18	UniRef90	UniRef90_A0A413BQD9	DNA-binding protein	NA
UHGV-0636166_18	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0636166_19	PHROG	phrog_16490	NA	unknown function
UHGV-0636166_19	UniRef90	UniRef90_A0A8F1B6S5	Outer capsid protein/viral fiber	NA
UHGV-0636166_19	eggNOG-mapper	762982.HMPREF9442_01201	NA	NA
UHGV-0636166_20	Structural annotation	PF10628	NA	NA
UHGV-0636166_21	Structural annotation	PF21744	NA	NA
UHGV-0636166_23	PHROG	phrog_15037	NA	unknown function
UHGV-0636166_23	UniRef90	UniRef90_UPI001C46F9DA	phage holin family protein	NA
UHGV-0636166_23	eggNOG-mapper	563008.HMPREF0665_02457	NA	NA
UHGV-0636166_23	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0636166_27	PHROG	phrog_32516	NA	unknown function
UHGV-0636166_27	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-0636166_27	Structural annotation	PF11134, COG3292	NA	NA
UHGV-0636166_31	PHROG	phrog_19572	NA	unknown function
UHGV-0636166_31	UniRef90	UniRef90_UPI001C4689B9	NA	NA
UHGV-0636166_31	eggNOG-mapper	537011.PREVCOP_04244	NA	NA
UHGV-0636166_31	Pfam	PF14902	NA	DUF4494
UHGV-0636166_31	Structural annotation	PF14902	NA	NA
UHGV-0636166_32	Structural annotation	PF13069	NA	NA
UHGV-0636166_35	PHROG	phrog_32732	NA	unknown function
UHGV-0636166_35	UniRef90	UniRef90_A0A6I0HVM8	NA	NA
UHGV-0636166_35	eggNOG-mapper	1236504.HMPREF2132_11095	NA	NA
UHGV-0636166_35	dbAPIS	APIS052	NA	NA
UHGV-0636166_37	Structural annotation	PF03127	NA	NA
UHGV-0636166_39	Structural annotation	PF19716	NA	NA
UHGV-0636166_41	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0636166_44	PHROG	phrog_824	NA	unknown function
UHGV-0636166_44	UniRef90	UniRef90_A0A7W7F241	VRR-NUC domain-containing protein	NA
UHGV-0636166_44	eggNOG-mapper	1122985.HMPREF1991_01533	VRR-NUC domain	NA
UHGV-0636166_45	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0636166_45	eggNOG-mapper	435591.BDI_0859	DnaD domain protein	NA
UHGV-0636166_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0636166_45	Structural annotation	PF07106, MF_01819, TIGR01714, COG1510	NA	NA
UHGV-0636166_46	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0636166_46	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0636166_46	UniRef90	UniRef90_UPI001F195CB5	DNA cytosine methyltransferase	NA
UHGV-0636166_46	eggNOG-mapper	1227276.HMPREF9148_00139	DNA methylase	NA
UHGV-0636166_46	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0636166_46	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0636166_46	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0636166_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0636166_46	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0636166_48	Structural annotation	PF12701, PF18300, NF037951	NA	NA
UHGV-0636166_50	eggNOG-mapper	999419.HMPREF1077_02928	NA	NA
UHGV-0636166_50	Structural annotation	NF033787	NA	NA
UHGV-0636166_51	eggNOG-mapper	999419.HMPREF1077_02927	NA	NA
UHGV-0636166_52	PHROG	phrog_874	NA	unknown function
UHGV-0636166_52	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0636166_52	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0636166_54	UniRef90	UniRef90_UPI001C47721E	helix-turn-helix domain-containing protein	NA
UHGV-0636166_54	eggNOG-mapper	1121097.JCM15093_2727	Helix-turn-helix	NA
UHGV-0636166_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0636166_54	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA