UHGV-0773920

Genome information

Genome length 30,345 bps

CDS count 58

Completeness 85.48% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0773920
vOTU ID	vOTU-024449
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	ERS795820\|NODE_1_length_30345_cov_11.537097
BioSample	SAMEA3488671
Country	Malawi
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.32
Jumbo phage	No

Genome content
Genome length	30,345 bps
GC content	40.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.63%
Average CDS length	472.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0773920_3	PHROG	phrog_2316	NA	unknown function
UHGV-0773920_3	UniRef90	UniRef90_UPI000400DA88	NA	NA
UHGV-0773920_3	eggNOG-mapper	1280698.AUJS01000007_gene1022	NA	NA
UHGV-0773920_3	Pfam	PF16475	NA	DUF5052
UHGV-0773920_3	Structural annotation	PF16475	NA	NA
UHGV-0773920_8	PHROG	phrog_9822	NA	unknown function
UHGV-0773920_10	PHROG	phrog_8684	NA	unknown function
UHGV-0773920_10	UniRef90	UniRef90_UPI001C00C8FC	YopX family protein	NA
UHGV-0773920_10	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0773920_10	Pfam	PF09643	YopX protein	YopX
UHGV-0773920_10	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0773920_10	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0773920_11	PHROG	phrog_15077	NA	unknown function
UHGV-0773920_11	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0773920_11	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0773920_12	PHROG	phrog_8470	NA	unknown function
UHGV-0773920_12	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0773920_12	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0773920_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0773920_12	Structural annotation	PF14284	NA	NA
UHGV-0773920_13	PHROG	phrog_4433	NA	unknown function
UHGV-0773920_13	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0773920_13	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0773920_14	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0773920_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0773920_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0773920_15	UniRef90	UniRef90_A0A6N9JSQ7	RNase H type-1 domain-containing protein	NA
UHGV-0773920_15	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0773920_15	Pfam	PF00075	RNase H	RNase_H
UHGV-0773920_15	COG	COG0328	Ribonuclease HI	NA
UHGV-0773920_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0773920_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0773920_17	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0773920_17	Structural annotation	PF01446	NA	NA
UHGV-0773920_23	PHROG	phrog_32192	NA	unknown function
UHGV-0773920_23	eggNOG-mapper	1280698.AUJS01000007_gene1007	NA	NA
UHGV-0773920_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0773920_30	UniRef90	UniRef90_A0A173VG88	Helix-turn-helix domain	NA
UHGV-0773920_30	eggNOG-mapper	552396.HMPREF0863_02446	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0773920_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0773920_30	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0773920_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0773920_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0773920_31	UniRef90	UniRef90_A0A173VG78	Helix-turn-helix domain-containing protein	NA
UHGV-0773920_31	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0773920_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0773920_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0773920_31	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0773920_32	PHROG	phrog_20886	NA	unknown function
UHGV-0773920_32	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0773920_32	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-0773920_32	Structural annotation	PF06114	NA	NA
UHGV-0773920_33	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0773920_33	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0773920_33	UniRef90	UniRef90_A0A173VG58	Endonuclease	NA
UHGV-0773920_33	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0773920_33	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0773920_33	COG	COG4748	NA	NA
UHGV-0773920_33	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0773920_34	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0773920_34	PHROG	phrog_8036	NA	unknown function
UHGV-0773920_34	UniRef90	UniRef90_A0A3P3QSS9	DNA damage-inducible protein D	NA
UHGV-0773920_34	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-0773920_34	AcrCatalog	cluster_17589	NA	NA
UHGV-0773920_34	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0773920_34	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0773920_34	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0773920_34	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0773920_35	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0773920_35	PHROG	phrog_95	integrase	integration and excision
UHGV-0773920_35	UniRef90	UniRef90_UPI00156F85ED	recombinase family protein	NA
UHGV-0773920_35	eggNOG-mapper	411461.DORFOR_00037	Resolvase, N terminal domain	NA
UHGV-0773920_35	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0773920_35	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0773920_35	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0773920_35	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0773920_36	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0773920_36	PHROG	phrog_1493	endolysin	lysis
UHGV-0773920_36	UniRef90	UniRef90_UPI00041018D3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0773920_36	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0773920_36	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0773920_36	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0773920_36	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0773920_36	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0773920_37	PHROG	phrog_1129	holin	lysis
UHGV-0773920_37	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-0773920_37	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0773920_37	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0773920_37	Structural annotation	PF06946	NA	NA
UHGV-0773920_38	PHROG	phrog_1009	NA	unknown function
UHGV-0773920_38	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0773920_38	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0773920_39	eggNOG-mapper	411461.DORFOR_00723	NA	NA
UHGV-0773920_40	eggNOG-mapper	1280698.AUJS01000007_gene1056	NA	NA
UHGV-0773920_40	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0773920_41	PHROG	phrog_32322	NA	unknown function
UHGV-0773920_41	UniRef90	UniRef90_B0G3A4	Ig-like_bact domain-containing protein	NA
UHGV-0773920_41	eggNOG-mapper	1280698.AUJS01000007_gene1055	NA	NA
UHGV-0773920_41	Pfam	PF13754	NA	Big_3_4
UHGV-0773920_41	Structural annotation	PF13754	NA	NA
UHGV-0773920_42	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0773920_42	PHROG	phrog_11157	NA	unknown function
UHGV-0773920_42	UniRef90	UniRef90_B0G3A5	Big_13 domain-containing protein	NA
UHGV-0773920_42	eggNOG-mapper	742765.HMPREF9457_03368	NA	NA
UHGV-0773920_42	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0773920_42	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0773920_42	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0773920_42	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0773920_42	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0773920_43	eggNOG-mapper	1280698.AUJS01000007_gene1053	NA	NA
UHGV-0773920_44	PHROG	phrog_12931	NA	unknown function
UHGV-0773920_44	eggNOG-mapper	1280698.AUJS01000007_gene1052	NA	NA
UHGV-0773920_45	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0773920_46	PHROG	phrog_25635	NA	unknown function
UHGV-0773920_46	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0773920_46	Structural annotation	PF20747	NA	NA
UHGV-0773920_47	PHROG	phrog_538	minor tail protein	tail
UHGV-0773920_47	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0773920_47	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-0773920_47	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0773920_47	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0773920_48	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0773920_48	UniRef90	UniRef90_A0A174L0T5	Phage-related protein	NA
UHGV-0773920_48	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-0773920_48	COG	COG1511	NA	NA
UHGV-0773920_48	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0773920_49	PHROG	phrog_1633	NA	unknown function
UHGV-0773920_49	UniRef90	UniRef90_UPI00157064A0	NA	NA
UHGV-0773920_49	eggNOG-mapper	1280698.AUJS01000007_gene1046	NA	NA
UHGV-0773920_49	Pfam	PF17318	NA	DUF5361
UHGV-0773920_49	Structural annotation	PF17318	NA	NA
UHGV-0773920_50	PHROG	phrog_1526	NA	unknown function
UHGV-0773920_50	UniRef90	UniRef90_A0A1Q8EF45	NA	NA
UHGV-0773920_50	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0773920_51	PHROG	phrog_117	major tail protein	tail
UHGV-0773920_51	UniRef90	UniRef90_UPI001F18A06D	phage tail protein	NA
UHGV-0773920_51	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0773920_51	COG	COG5492	NA	NA
UHGV-0773920_51	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0773920_52	PHROG	phrog_123	tail terminator	connector
UHGV-0773920_52	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0773920_52	Structural annotation	PF06141	NA	NA
UHGV-0773920_53	PHROG	phrog_387	neck protein	connector
UHGV-0773920_53	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-0773920_54	PHROG	phrog_501	head closure Hc1	connector
UHGV-0773920_54	UniRef90	UniRef90_Q7Y4I1	Gp43	NA
UHGV-0773920_54	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-0773920_54	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0773920_55	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0773920_55	UniRef90	UniRef90_UPI000EB9D93E	phage Gp19/Gp15/Gp42 family protein	NA
UHGV-0773920_55	Pfam	PF09355	NA	Phage_Gp19
UHGV-0773920_55	Structural annotation	PF09355	NA	NA
UHGV-0773920_57	PHROG	phrog_10	major head protein	head and packaging
UHGV-0773920_57	UniRef90	UniRef90_A0A174L023	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0773920_57	eggNOG-mapper	205876.Q855V6_9CAUD	peptidase activity	NA
UHGV-0773920_57	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0773920_57	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0773920_57	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA