UHGV-0785232

Genome information

Genome length 30,859 bps

CDS count 48

Completeness 75.49% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0785232
vOTU ID	vOTU-033151
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	SRS2267586\|NODE_14_length_30859_cov_18.065349
BioSample	NA
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.64
Jumbo phage	No

Genome content
Genome length	30,859 bps
GC content	50.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.42%
Average CDS length	598.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0785232_1	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0785232_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0785232_2	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0785232_2	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0785232_2	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0785232_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0785232_2	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0785232_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0785232_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0785232_2	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0785232_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-0785232_3	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0785232_3	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0785232_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0785232_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0785232_4	PHROG	phrog_8680	NA	unknown function
UHGV-0785232_4	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0785232_4	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0785232_4	Pfam	PF14386	NA	DUF4417
UHGV-0785232_4	Structural annotation	PF14386	NA	NA
UHGV-0785232_6	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0785232_6	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0785232_6	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0785232_6	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0785232_6	COG	COG2369	NA	NA
UHGV-0785232_6	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0785232_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0785232_9	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0785232_9	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0785232_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0785232_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0785232_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0785232_10	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0785232_10	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0785232_10	Structural annotation	PF06810	NA	NA
UHGV-0785232_11	PHROG	phrog_544	major head protein	head and packaging
UHGV-0785232_11	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0785232_11	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0785232_11	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0785232_13	PHROG	phrog_17977	NA	unknown function
UHGV-0785232_13	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0785232_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0785232_14	Structural annotation	PF11367	NA	NA
UHGV-0785232_15	PHROG	phrog_885	major tail protein	tail
UHGV-0785232_15	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0785232_15	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0785232_15	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0785232_16	PHROG	phrog_18646	NA	unknown function
UHGV-0785232_18	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0785232_18	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0785232_18	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0785232_18	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0785232_18	Structural annotation	PF20155	NA	NA
UHGV-0785232_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0785232_19	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0785232_19	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0785232_19	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0785232_20	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0785232_20	UniRef90	UniRef90_A0A413DNC1	Prophage_tail domain-containing protein	NA
UHGV-0785232_20	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0785232_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0785232_20	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0785232_20	COG	COG4926	Phage-related protein	NA
UHGV-0785232_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0785232_21	UniRef90	UniRef90_UPI000C79F998	H-type lectin domain-containing protein	NA
UHGV-0785232_21	Structural annotation	PF10651, NF041074	NA	NA
UHGV-0785232_22	UniRef90	UniRef90_A0A1C5MZC0	NA	NA
UHGV-0785232_22	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-0785232_22	Structural annotation	PF19789	NA	NA
UHGV-0785232_23	PHROG	phrog_32779	NA	unknown function
UHGV-0785232_23	eggNOG-mapper	1120998.AUFC01000030_gene2248	NA	NA
UHGV-0785232_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0785232_25	PHROG	phrog_291	endolysin	lysis
UHGV-0785232_25	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0785232_25	eggNOG-mapper	877424.ATWC01000009_gene1193	Glycosyl hydrolases family 25	NA
UHGV-0785232_25	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0785232_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0785232_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0785232_25	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0785232_26	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0785232_27	PHROG	phrog_13256	NA	unknown function
UHGV-0785232_27	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0785232_28	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0785232_28	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0785232_28	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0785232_29	PHROG	phrog_3754	NA	unknown function
UHGV-0785232_29	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0785232_30	PHROG	phrog_21718	NA	unknown function
UHGV-0785232_30	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0785232_31	PHROG	phrog_22984	NA	unknown function
UHGV-0785232_32	PHROG	phrog_16490	NA	unknown function
UHGV-0785232_32	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0785232_33	PHROG	phrog_20016	NA	unknown function
UHGV-0785232_33	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0785232_33	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0785232_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0785232_34	Structural annotation	PF12510	NA	NA
UHGV-0785232_35	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0785232_37	KOfam	K14059	int; integrase	NA
UHGV-0785232_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0785232_37	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-0785232_37	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0785232_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0785232_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0785232_37	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0785232_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0785232_38	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0785232_40	Structural annotation	PF12688	NA	NA
UHGV-0785232_42	Structural annotation	PF10007, MF_01819, TIGR03433, COG1733	NA	NA
UHGV-0785232_43	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0785232_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0785232_44	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0785232_44	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0785232_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0785232_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0785232_44	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0785232_45	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0785232_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0785232_45	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0785232_45	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0785232_46	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0785232_46	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0785232_48	PHROG	phrog_7964	NA	unknown function
UHGV-0785232_48	UniRef90	UniRef90_A0A4S2Q3Z3	Polymer-forming cytoskeletal protein (Fragment)	NA
UHGV-0785232_48	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0785232_48	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0785232_48	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA