UHGV-0816712

Genome information

vOTU vOTU-019762

Genome length 28,189 bps

CDS count 39

Completeness 83.64% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0816712
vOTU ID	vOTU-019762
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	SRS2267584\|NODE_16_length_28189_cov_25.994668
BioSample	SAMN07211083
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.21
Jumbo phage	No

Genome content
Genome length	28,189 bps
GC content	51.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	92.91%
Average CDS length	676.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0816712_1	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0816712_1	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0816712_1	eggNOG-mapper	1145276.T479_19995	Phage terminase, small subunit	NA
UHGV-0816712_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0816712_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0816712_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0816712_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0816712_2	UniRef90	UniRef90_A0A1Y4R6J8	Terminase	NA
UHGV-0816712_2	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0816712_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0816712_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0816712_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0816712_2	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0816712_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0816712_3	UniRef90	UniRef90_U2SKC6	Phage portal protein, HK97 family	NA
UHGV-0816712_3	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0816712_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0816712_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0816712_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0816712_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0816712_4	KOfam	K06904	NA	NA
UHGV-0816712_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0816712_4	UniRef90	UniRef90_A0A1F2PDD9	Caudovirus prohead protease	NA
UHGV-0816712_4	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0816712_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0816712_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0816712_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0816712_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0816712_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0816712_5	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0816712_5	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0816712_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0816712_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0816712_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0816712_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0816712_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0816712_6	PHROG	phrog_2550	NA	unknown function
UHGV-0816712_6	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0816712_6	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0816712_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0816712_7	PHROG	phrog_19734	NA	unknown function
UHGV-0816712_7	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-0816712_7	eggNOG-mapper	999413.HMPREF1094_02006	NA	NA
UHGV-0816712_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0816712_8	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0816712_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0816712_9	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0816712_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0816712_9	Structural annotation	TIGR01725	NA	NA
UHGV-0816712_10	PHROG	phrog_88	major tail protein	tail
UHGV-0816712_10	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0816712_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0816712_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0816712_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0816712_11	Structural annotation	PF11836	NA	NA
UHGV-0816712_13	PHROG	phrog_23464	NA	unknown function
UHGV-0816712_13	UniRef90	UniRef90_A0A316M686	TMP_3 domain-containing protein	NA
UHGV-0816712_13	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0816712_13	COG	COG5283	Phage-related tail protein	NA
UHGV-0816712_13	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0816712_14	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0816712_14	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0816712_15	PHROG	phrog_13879	NA	unknown function
UHGV-0816712_15	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0816712_15	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0816712_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0816712_17	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0816712_17	PHROG	phrog_11157	NA	unknown function
UHGV-0816712_17	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0816712_17	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0816712_17	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0816712_17	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0816712_17	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0816712_17	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0816712_18	PHROG	phrog_18725	NA	unknown function
UHGV-0816712_18	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0816712_18	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0816712_19	Structural annotation	PF19789	NA	NA
UHGV-0816712_20	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0816712_20	UniRef90	UniRef90_A0A437MC91	Phage tail protein	NA
UHGV-0816712_20	eggNOG-mapper	1121406.JAEX01000012_gene656	Phage tail assembly chaperone protein	NA
UHGV-0816712_20	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0816712_20	Structural annotation	PF16778	NA	NA
UHGV-0816712_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0816712_22	PHROG	phrog_18955	NA	unknown function
UHGV-0816712_22	UniRef90	UniRef90_A0A1C6JAB9	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0816712_22	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-0816712_22	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0816712_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0816712_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0816712_22	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0816712_23	PHROG	phrog_1129	holin	lysis
UHGV-0816712_23	UniRef90	UniRef90_A0A416MDZ9	Enolase	NA
UHGV-0816712_23	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0816712_23	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0816712_23	Structural annotation	PF06946	NA	NA
UHGV-0816712_25	KOfam	K14059	int; integrase	NA
UHGV-0816712_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0816712_25	UniRef90	UniRef90_A0A212JT46	Putative site-specific recombinase	NA
UHGV-0816712_25	eggNOG-mapper	877414.ATWA01000018_gene2094	Phage integrase family	NA
UHGV-0816712_25	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0816712_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0816712_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0816712_25	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0816712_26	PHROG	phrog_806	NA	unknown function
UHGV-0816712_26	UniRef90	UniRef90_A0A1C6HT90	NA	NA
UHGV-0816712_26	eggNOG-mapper	1280686.AUKE01000001_gene2110	NA	NA
UHGV-0816712_26	Pfam	PF16729	NA	DUF5067
UHGV-0816712_26	Structural annotation	PF16729, MF_00791, NF003967, COG2967	NA	NA
UHGV-0816712_27	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0816712_27	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0816712_27	UniRef90	UniRef90_UPI001EDD2FD6	helix-turn-helix domain-containing protein	NA
UHGV-0816712_27	eggNOG-mapper	1262914.BN533_00809	Peptidase S24-like	NA
UHGV-0816712_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0816712_27	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0816712_27	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0816712_27	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0816712_28	UniRef90	UniRef90_R6I666	Putative cro repressor	NA
UHGV-0816712_28	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-0816712_28	Pfam	PF05339	NA	DUF739
UHGV-0816712_28	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0816712_28	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0816712_30	PHROG	phrog_750	NA	unknown function
UHGV-0816712_30	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0816712_30	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0816712_31	PHROG	phrog_7338	NA	unknown function
UHGV-0816712_31	UniRef90	UniRef90_UPI0017460947	helix-turn-helix domain-containing protein	NA
UHGV-0816712_31	eggNOG-mapper	999423.HMPREF9161_01307	Helix-turn-helix domain	NA
UHGV-0816712_31	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0816712_31	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0816712_33	PHROG	phrog_4973	NA	unknown function
UHGV-0816712_33	UniRef90	UniRef90_A0A6J5M6R8	Helix-turn-helix domain containing protein	NA
UHGV-0816712_33	eggNOG-mapper	935261.JAGL01000009_gene1175	Helix-turn-helix domain	NA
UHGV-0816712_33	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0816712_34	Structural annotation	PF09943	NA	NA
UHGV-0816712_35	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0816712_35	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0816712_35	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0816712_35	Pfam	PF06378	NA	DUF1071
UHGV-0816712_35	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0816712_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0816712_36	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0816712_36	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0816712_36	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0816712_37	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0816712_37	UniRef90	UniRef90_A0A3D0LZU3	HNH domain-containing protein	NA
UHGV-0816712_37	eggNOG-mapper	1123058.KB894266_gene1536	HNH endonuclease	NA
UHGV-0816712_37	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0816712_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0816712_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0816712_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0816712_38	UniRef90	UniRef90_A0A847VY31	Single-stranded DNA-binding protein	NA
UHGV-0816712_38	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0816712_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0816712_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0816712_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0816712_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0816712_38	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0816712_39	PHROG	phrog_15768	NA	unknown function
UHGV-0816712_39	UniRef90	UniRef90_A0A1C6J8D5	NA	NA
UHGV-0816712_39	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0816712_39	Pfam	PF19808	NA	DUF6291
UHGV-0816712_39	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0816712_39	Structural annotation	PF19808	NA	NA