UHGV-0820320

Genome information

Genome length 22,763 bps

CDS count 41

Completeness 55.79% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0820320
vOTU ID	vOTU-033238
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	ERS795771\|NODE_3_length_22763_cov_4.799081
BioSample	SAMEA3488622
Country	Malawi
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	1
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.64
Jumbo phage	No

Genome content
Genome length	22,763 bps
GC content	51.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	84.98%
Average CDS length	475.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0820320_1	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0820320_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0820320_2	PHROG	phrog_291	endolysin	lysis
UHGV-0820320_2	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0820320_2	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0820320_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0820320_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0820320_2	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0820320_4	PHROG	phrog_15303	NA	unknown function
UHGV-0820320_9	PHROG	phrog_16490	NA	unknown function
UHGV-0820320_9	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0820320_10	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0820320_11	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0820320_12	KOfam	K14059	int; integrase	NA
UHGV-0820320_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0820320_12	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0820320_12	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0820320_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0820320_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0820320_12	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0820320_13	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0820320_13	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0820320_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0820320_13	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0820320_13	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0820320_16	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0820320_16	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0820320_16	UniRef90	UniRef90_UPI001EE95DBE	3'-5' exoribonuclease	NA
UHGV-0820320_16	eggNOG-mapper	665956.HMPREF1032_02791	NA	NA
UHGV-0820320_16	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0820320_16	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0820320_16	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0820320_16	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0820320_16	Structural annotation	PF13361, PF00533, MF_00157, NF008746, COG2925	NA	NA
UHGV-0820320_17	Structural annotation	PF06776, COG5342	NA	NA
UHGV-0820320_20	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0820320_28	PHROG	phrog_14970	NA	unknown function
UHGV-0820320_28	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0820320_28	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0820320_29	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0820320_29	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0820320_29	Pfam	PF05772	NinB protein	NinB
UHGV-0820320_29	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0820320_30	Structural annotation	PF09723	NA	NA
UHGV-0820320_32	PHROG	phrog_7566	NA	unknown function
UHGV-0820320_32	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0820320_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0820320_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0820320_33	UniRef90	UniRef90_A0A329TTF5	Single-stranded DNA-binding protein	NA
UHGV-0820320_33	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0820320_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0820320_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0820320_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0820320_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0820320_33	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0820320_34	PHROG	phrog_6969	NA	unknown function
UHGV-0820320_34	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-0820320_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0820320_34	Pfam	PF19481	NA	DUF6017
UHGV-0820320_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0820320_34	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0820320_36	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0820320_36	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0820320_36	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0820320_36	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0820320_36	Pfam	PF13614	AAA domain	AAA_31
UHGV-0820320_36	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0820320_36	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0820320_37	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0820320_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0820320_38	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0820320_38	UniRef90	UniRef90_A0A2A7AMC5	ParB domain-containing protein	NA
UHGV-0820320_38	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0820320_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0820320_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0820320_38	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0820320_39	Structural annotation	PF04545	NA	NA
UHGV-0820320_41	PHROG	phrog_3136	NA	unknown function
UHGV-0820320_41	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0820320_41	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA