UHGV-0828925

Genome information

vOTU vOTU-020773

Genome length 34,506 bps

CDS count 47

Completeness 85.07% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0828925
vOTU ID	vOTU-020773
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	ERS795722\|NODE_1_length_34506_cov_11.193112
BioSample	SAMEA3488573
Country	Malawi
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	38
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	98.28
Jumbo phage	No

Genome content
Genome length	34,506 bps
GC content	46.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	87.03%
Average CDS length	640.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0828925_1	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0828925_1	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0828925_1	UniRef90	UniRef90_G8C7N5	Spanin, inner membrane subunit	NA
UHGV-0828925_1	eggNOG-mapper	432201.K7P710_9CAUD	Bacteriophage Rz lysis protein	NA
UHGV-0828925_1	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0828925_1	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0828925_1	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0828925_2	PHROG	phrog_34701	NA	unknown function
UHGV-0828925_3	PHROG	phrog_571	NA	unknown function
UHGV-0828925_3	UniRef90	UniRef90_A0A067HHZ1	NA	NA
UHGV-0828925_3	eggNOG-mapper	10761.Q716B0_BPSFV	NA	NA
UHGV-0828925_3	Pfam	PF10834	NA	DUF2560
UHGV-0828925_3	Structural annotation	PF10834	NA	NA
UHGV-0828925_4	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0828925_4	UniRef90	UniRef90_P04893	Terminase, small subunit	NA
UHGV-0828925_4	eggNOG-mapper	90371.CY43_01855	DNA-packaging protein gp3	NA
UHGV-0828925_4	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0828925_4	Structural annotation	PF16677	NA	NA
UHGV-0828925_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0828925_5	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0828925_5	UniRef90	UniRef90_P26745	Terminase, large subunit	NA
UHGV-0828925_5	eggNOG-mapper	1127357.I1TEI5_9CAUD	Terminase-like family	NA
UHGV-0828925_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0828925_5	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0828925_5	HAMAP	MF_04148	Terminase, large subunit	NA
UHGV-0828925_5	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0828925_6	PHROG	phrog_14911	NA	unknown function
UHGV-0828925_6	UniRef90	UniRef90_B7LU94	Portal protein (Protein gp1)	NA
UHGV-0828925_6	eggNOG-mapper	198214.SF0216	Phage P22-like portal protein	NA
UHGV-0828925_6	Pfam	PF16510	Phage P22-like portal protein	P22_portal
UHGV-0828925_6	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0828925_7	PHROG	phrog_648	head scaffolding protein	head and packaging
UHGV-0828925_7	UniRef90	UniRef90_G5DA98	Scaffolding protein	NA
UHGV-0828925_7	eggNOG-mapper	198214.SF0217	Bacteriophage, scaffolding protein	NA
UHGV-0828925_7	Pfam	PF09306	Bacteriophage, scaffolding protein	Phage-scaffold
UHGV-0828925_7	Structural annotation	PF09306	NA	NA
UHGV-0828925_8	PHROG	phrog_22632	head protein	head and packaging
UHGV-0828925_8	UniRef90	UniRef90_G5DA99	Coat protein	NA
UHGV-0828925_8	eggNOG-mapper	198214.SF0218	P22 coat protein - gene protein 5	NA
UHGV-0828925_8	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0828925_8	Structural annotation	PF11651, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0828925_9	PHROG	phrog_3769	NA	unknown function
UHGV-0828925_9	UniRef90	UniRef90_A0A4D0RTA6	Dihydrolipoamide acetyltransferase	NA
UHGV-0828925_9	eggNOG-mapper	1168548.I6S1J7_9CAUD	NA	NA
UHGV-0828925_10	PHROG	phrog_637	head-tail adaptor Ad3	connector
UHGV-0828925_10	UniRef90	UniRef90_B7LU90	Putative DNA stabilization protein GP4	NA
UHGV-0828925_10	eggNOG-mapper	198214.SF0220	Packaged DNA stabilization protein gp4	NA
UHGV-0828925_10	Pfam	PF11650	P22 tail accessory factor	P22_Tail-4
UHGV-0828925_10	Structural annotation	PF11650	NA	NA
UHGV-0828925_11	PHROG	phrog_578	head closure Hc3	connector
UHGV-0828925_11	UniRef90	UniRef90_P26749	Packaged DNA stabilization protein gp10	NA
UHGV-0828925_11	eggNOG-mapper	155148.Q9AYZ4_BPHK6	Phage stabilisation protein	NA
UHGV-0828925_11	Pfam	PF11134	Phage stabilisation protein	Phage_stabilise
UHGV-0828925_11	Structural annotation	PF11134, MF_01282, NF000022, NF038128, COG3292	NA	NA
UHGV-0828925_12	PHROG	phrog_1030	NA	unknown function
UHGV-0828925_12	UniRef90	UniRef90_L3Q3P8	Phage_tail_NK domain-containing protein	NA
UHGV-0828925_12	eggNOG-mapper	10761.Q716G6_BPSFV	Pfam:Phage_tail_NK	NA
UHGV-0828925_12	Pfam	PF16532	Sf6-type phage tail needle knob or tip of some Caudovirales	Phage_tail_NK
UHGV-0828925_12	Structural annotation	PF16532, NF033147	NA	NA
UHGV-0828925_13	PHROG	phrog_651	head morphogenesis	head and packaging
UHGV-0828925_13	UniRef90	UniRef90_G8EYJ5	Head assembly protein	NA
UHGV-0828925_13	eggNOG-mapper	10761.Q716G5_BPSFV	NA	NA
UHGV-0828925_13	Pfam	PF11039	NA	DUF2824
UHGV-0828925_13	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-0828925_14	PHROG	phrog_598	DNA ejection	DNA, RNA and nucleotide metabolism
UHGV-0828925_14	UniRef90	UniRef90_Q716G4	Gene 11 protein	NA
UHGV-0828925_14	eggNOG-mapper	155148.VG07_BPHK6	viral entry into host cell	NA
UHGV-0828925_15	PHROG	phrog_917	released from the phage upon host infection	other
UHGV-0828925_15	UniRef90	UniRef90_A0A3L2NU52	Acyltransferase	NA
UHGV-0828925_15	eggNOG-mapper	754331.AEME01000001_gene15	DNA/protein translocase of phage P22 injectosome	NA
UHGV-0828925_15	Pfam	PF16928	DNA/protein translocase of phage P22 injectosome	Inj_translocase
UHGV-0828925_15	COG	COG1835	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	NA
UHGV-0828925_15	Structural annotation	PF16928	NA	NA
UHGV-0828925_16	PHROG	phrog_770	DNA transfer protein	other
UHGV-0828925_16	UniRef90	UniRef90_A0A829DZH6	DNA transfer protein gp16	NA
UHGV-0828925_16	eggNOG-mapper	754331.AEME01000001_gene16	NA	NA
UHGV-0828925_17	PHROG	phrog_7745	superinfection exclusion SieA-like	moron, auxiliary metabolic gene and host takeover
UHGV-0828925_17	UniRef90	UniRef90_Q38674	Superinfection exclusion protein A	NA
UHGV-0828925_17	eggNOG-mapper	1124991.MU9_2893	NA	NA
UHGV-0828925_17	dbAPIS	APIS021	Superinfection exclusion.	NA
UHGV-0828925_18	PHROG	phrog_2384	NA	unknown function
UHGV-0828925_18	UniRef90	UniRef90_Q6H9X0	P63C domain-containing protein	NA
UHGV-0828925_18	eggNOG-mapper	155864.EDL933_1377	P63C domain	NA
UHGV-0828925_18	Pfam	PF10546	P63C domain	P63C
UHGV-0828925_18	Structural annotation	PF10546	NA	NA
UHGV-0828925_19	PHROG	phrog_795	partition protein ATPase	other
UHGV-0828925_19	UniRef90	UniRef90_P03049	Regulatory protein mnt	NA
UHGV-0828925_19	eggNOG-mapper	329864.B8K1J0_9CAUD	Arc-like DNA binding domain	NA
UHGV-0828925_19	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0828925_19	Pfam	PF11423	Regulatory protein Mnt	Repressor_Mnt
UHGV-0828925_19	Structural annotation	PF03869, TIGR04563, COG4691	NA	NA
UHGV-0828925_20	PHROG	phrog_795	partition protein ATPase	other
UHGV-0828925_20	UniRef90	UniRef90_A0A2G8YG42	Arc family DNA-binding protein	NA
UHGV-0828925_20	eggNOG-mapper	754331.AEME01000001_gene17	Arc-like DNA binding domain	NA
UHGV-0828925_20	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0828925_21	UniRef90	UniRef90_A0A0K4YR87	Arc family DNA-binding protein	NA
UHGV-0828925_21	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0828925_22	PHROG	phrog_7150	NA	unknown function
UHGV-0828925_23	PHROG	phrog_245	anti-repressor Ant	transcription regulation
UHGV-0828925_23	UniRef90	UniRef90_D6JCP6	Bro-N domain-containing protein	NA
UHGV-0828925_23	eggNOG-mapper	155864.EDL933_1756	BRO family, N-terminal domain	NA
UHGV-0828925_23	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0828925_23	Pfam	PF10548	P22AR C-terminal domain	P22_AR_C
UHGV-0828925_23	COG	COG3617	Prophage antirepressor	NA
UHGV-0828925_23	Structural annotation	PF10547, PF10548, COG3617	NA	NA
UHGV-0828925_24	KOfam	K16709	amsF; amylovoran biosynthesis protein AmsF	NA
UHGV-0828925_24	PHROG	phrog_8280	tail spike protein with colonic acid degradation activity	tail
UHGV-0828925_24	UniRef90	UniRef90_UPI001F04FEF6	phage head-binding domain-containing protein	NA
UHGV-0828925_24	eggNOG-mapper	155148.Q9AYY6_BPHK6	pathogenesis	NA
UHGV-0828925_24	Pfam	PF09008	Head binding	Head_binding
UHGV-0828925_25	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0828925_25	PHROG	phrog_7244	integrase	integration and excision
UHGV-0828925_25	UniRef90	UniRef90_P03700	Integrase	NA
UHGV-0828925_25	eggNOG-mapper	37554.Q9MCR4_BPHK7	Phage integrase family	NA
UHGV-0828925_25	Pfam	PF09003	Bacteriophage lambda integrase, Arm DNA-binding domain	Arm-DNA-bind_1
UHGV-0828925_25	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0828925_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0828925_25	Structural annotation	PF00589, PF09003, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0828925_26	PHROG	phrog_676	NA	unknown function
UHGV-0828925_26	eggNOG-mapper	1147143.K7P798_9CAUD	NA	NA
UHGV-0828925_26	Structural annotation	PF16857, MF_00273, COG2157	NA	NA
UHGV-0828925_27	PHROG	phrog_14306	NA	unknown function
UHGV-0828925_27	UniRef90	UniRef90_A0A3S6ZQ36	NA	NA
UHGV-0828925_27	eggNOG-mapper	754331.AEME01000001_gene3603	NA	NA
UHGV-0828925_27	Pfam	PF04448	NA	DUF551
UHGV-0828925_28	PHROG	phrog_926	NA	unknown function
UHGV-0828925_28	UniRef90	UniRef90_A0A377E8U0	NA	NA
UHGV-0828925_28	eggNOG-mapper	10730.Q9XJH3_BP933	NA	NA
UHGV-0828925_29	PHROG	phrog_12350	NA	unknown function
UHGV-0828925_29	UniRef90	UniRef90_A0A0H0H4G1	NA	NA
UHGV-0828925_29	eggNOG-mapper	194949.Q7Y2N7_9CAUD	NA	NA
UHGV-0828925_30	PHROG	phrog_1380	NA	unknown function
UHGV-0828925_31	PHROG	phrog_368	NA	unknown function
UHGV-0828925_31	UniRef90	UniRef90_UPI000DA5C242	ead/Ea22-like family protein	NA
UHGV-0828925_31	eggNOG-mapper	90371.CY43_01655	Ead/Ea22-like protein	NA
UHGV-0828925_31	Pfam	PF13935	Ead/Ea22-like protein	Ead_Ea22
UHGV-0828925_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0828925_31	Structural annotation	PF13935	NA	NA
UHGV-0828925_32	PHROG	phrog_614	NA	unknown function
UHGV-0828925_32	UniRef90	UniRef90_UPI001CF5F2E8	hNH endonuclease	NA
UHGV-0828925_32	eggNOG-mapper	754331.AEME01000001_gene3601	NA	NA
UHGV-0828925_33	PHROG	phrog_656	abc2 anti-RecBCD	moron, auxiliary metabolic gene and host takeover
UHGV-0828925_33	UniRef90	UniRef90_P11191	Anti-RecBCD protein 2	NA
UHGV-0828925_33	eggNOG-mapper	432200.K7P6I5_9CAUD	NA	NA
UHGV-0828925_33	Pfam	PF11043	Bacteriophage P22, anti-RecBCD protein 2	Anti-RecBCD_p2
UHGV-0828925_33	dbAPIS	APIS020	Bacteriophage P22 Abc2 protein binds to the RecBCD enzyme from E. coli to promote phage growth and recombination; the RecBCD-Abc2 structure shows that Abc2 binds to the Chi-recognition domains of the RecC subunit in a position that might enable it to mediate the loading of phage recombinases onto its single-stranded DNA products.	NA
UHGV-0828925_33	Structural annotation	PF11043	NA	NA
UHGV-0828925_34	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0828925_34	PHROG	phrog_255	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0828925_34	UniRef90	UniRef90_A0A1V2SYQ7	3'-5' exoribonuclease	NA
UHGV-0828925_34	eggNOG-mapper	1147150.K7PM77_9CAUD	nucleic acid binding	NA
UHGV-0828925_34	Pfam	PF16473	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
UHGV-0828925_34	Structural annotation	PF16473, MF_00157, NF005289, COG0847	NA	NA
UHGV-0828925_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0828925_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0828925_35	UniRef90	UniRef90_UPI001F4EACA5	single-stranded DNA-binding protein	NA
UHGV-0828925_35	eggNOG-mapper	1090133.G8EYH4_9CAUD	single-stranded DNA binding	NA
UHGV-0828925_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0828925_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0828925_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0828925_35	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0828925_36	PHROG	phrog_1097	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0828925_36	UniRef90	UniRef90_A0A0J8WVQ7	DNA damage response protein A	NA
UHGV-0828925_36	eggNOG-mapper	1147150.K7PKU3_9CAUD	Rad52/22 family double-strand break repair protein	NA
UHGV-0828925_36	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0828925_36	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0828925_37	PHROG	phrog_2123	recombinase	other
UHGV-0828925_37	UniRef90	UniRef90_Q9MCQ7	Gp42.1	NA
UHGV-0828925_37	eggNOG-mapper	10761.Q716E5_BPSFV	NA	NA
UHGV-0828925_38	PHROG	phrog_550	CIII anti-termination	transcription regulation
UHGV-0828925_38	eggNOG-mapper	1127357.I1TEF0_9CAUD	NA	NA
UHGV-0828925_39	PHROG	phrog_1510	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0828925_39	UniRef90	UniRef90_O48416	Protein gp17	NA
UHGV-0828925_39	eggNOG-mapper	173443.Q8HAH1_BPST6	Pfam:Gp17	NA
UHGV-0828925_39	Pfam	PF17420	Superinfection exclusion gene product 17	GP17
UHGV-0828925_40	PHROG	phrog_8831	NA	unknown function
UHGV-0828925_41	PHROG	phrog_271	anti-termination protein N-like	transcription regulation
UHGV-0828925_41	UniRef90	UniRef90_A0A2T3V8P6	Regulatory protein N	NA
UHGV-0828925_41	eggNOG-mapper	1147146.K7P8A7_9CAUD	NA	NA
UHGV-0828925_42	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0828925_42	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0828925_42	UniRef90	UniRef90_Q9AZ21	Repressor protein cI	NA
UHGV-0828925_42	eggNOG-mapper	1147143.K7P7K3_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-0828925_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0828925_42	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0828925_42	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0828925_43	UniRef90	UniRef90_A0A0C2AWU6	Cro	NA
UHGV-0828925_43	eggNOG-mapper	1147143.K7P6T9_9CAUD	Cro	NA
UHGV-0828925_43	Pfam	PF09048	Cro	Cro
UHGV-0828925_43	Structural annotation	PF09048	NA	NA
UHGV-0828925_44	PHROG	phrog_191	CII-like transcriptional activator	transcription regulation
UHGV-0828925_44	UniRef90	UniRef90_P03043	Regulatory protein CII	NA
UHGV-0828925_44	eggNOG-mapper	1147147.K7P6Y2_9CAUD	Bacteriophage CII protein	NA
UHGV-0828925_44	Pfam	PF05269	Bacteriophage CII protein	Phage_CII
UHGV-0828925_44	Structural annotation	PF05269	NA	NA
UHGV-0828925_45	PHROG	phrog_2519	NA	unknown function
UHGV-0828925_46	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0828925_46	UniRef90	UniRef90_B7LUB6	Phage_rep_O domain-containing protein	NA
UHGV-0828925_46	eggNOG-mapper	754331.AEME01000001_gene3595	Bacteriophage replication protein O	NA
UHGV-0828925_46	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0828925_46	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0828925_47	PHROG	phrog_23150	NA	unknown function
UHGV-0828925_47	eggNOG-mapper	90371.CY43_01765	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0828925_47	COG	COG0305	Replicative DNA helicase	NA