UHGV-0838969

Genome information

Genome length 28,348 bps

CDS count 47

Completeness 69.49% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0838969
vOTU ID	vOTU-024487
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	ERS795770\|NODE_2_length_28348_cov_44.177457
BioSample	SAMEA3488621
Country	Malawi
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7.8
Jumbo phage	No

Genome content
Genome length	28,348 bps
GC content	52.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.62%
Average CDS length	558.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0838969_1	PHROG	phrog_10	major head protein	head and packaging
UHGV-0838969_1	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0838969_1	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0838969_1	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0838969_1	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0838969_1	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0838969_1	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0838969_1	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0838969_2	PHROG	phrog_749	NA	unknown function
UHGV-0838969_2	UniRef90	UniRef90_UPI00099504CB	phage head-tail connector protein	NA
UHGV-0838969_2	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0838969_3	PHROG	phrog_19734	NA	unknown function
UHGV-0838969_3	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0838969_3	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0838969_3	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0838969_4	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0838969_4	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0838969_5	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0838969_5	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0838969_5	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0838969_5	Structural annotation	TIGR01725	NA	NA
UHGV-0838969_6	PHROG	phrog_88	major tail protein	tail
UHGV-0838969_6	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0838969_6	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0838969_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0838969_6	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0838969_9	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0838969_9	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0838969_9	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0838969_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0838969_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0838969_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0838969_9	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0838969_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0838969_10	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0838969_10	eggNOG-mapper	748727.CLJU_c03670	tail component	NA
UHGV-0838969_10	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0838969_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0838969_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0838969_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0838969_11	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0838969_11	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0838969_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0838969_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0838969_11	COG	COG4926	Phage-related protein	NA
UHGV-0838969_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0838969_13	eggNOG-mapper	5786.XP_003288154.1	NA	NA
UHGV-0838969_13	Structural annotation	PF10651, PF01095	NA	NA
UHGV-0838969_14	KOfam	K07273	acm; lysozyme	NA
UHGV-0838969_14	PHROG	phrog_291	endolysin	lysis
UHGV-0838969_14	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0838969_14	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0838969_14	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0838969_14	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0838969_14	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0838969_16	PHROG	phrog_15303	NA	unknown function
UHGV-0838969_21	PHROG	phrog_16490	NA	unknown function
UHGV-0838969_21	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0838969_22	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0838969_23	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0838969_24	KOfam	K14059	int; integrase	NA
UHGV-0838969_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0838969_24	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0838969_24	eggNOG-mapper	1298920.KI911353_gene4877	Belongs to the 'phage' integrase family	NA
UHGV-0838969_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0838969_24	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0838969_24	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0838969_25	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0838969_25	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0838969_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0838969_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0838969_25	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0838969_28	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0838969_28	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0838969_28	UniRef90	UniRef90_A0A261FAN9	DNA polymerase III subunit epsilon	NA
UHGV-0838969_28	eggNOG-mapper	665956.HMPREF1032_02791	NA	NA
UHGV-0838969_28	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0838969_28	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0838969_28	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0838969_28	Structural annotation	PF00929, PF00533, MF_00157, NF004844, COG0847	NA	NA
UHGV-0838969_29	Structural annotation	PF06776, COG5342	NA	NA
UHGV-0838969_31	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0838969_31	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0838969_31	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0838969_32	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0838969_41	PHROG	phrog_14970	NA	unknown function
UHGV-0838969_41	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0838969_41	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0838969_42	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0838969_42	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0838969_42	Pfam	PF05772	NinB protein	NinB
UHGV-0838969_42	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0838969_43	Structural annotation	PF09723	NA	NA
UHGV-0838969_45	PHROG	phrog_7566	NA	unknown function
UHGV-0838969_45	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0838969_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0838969_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0838969_46	UniRef90	UniRef90_A0A329TTF5	Single-stranded DNA-binding protein	NA
UHGV-0838969_46	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0838969_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0838969_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0838969_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0838969_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0838969_46	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0838969_47	PHROG	phrog_6969	NA	unknown function
UHGV-0838969_47	UniRef90	UniRef90_A0A843HT15	Winged helix DNA-binding protein	NA
UHGV-0838969_47	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0838969_47	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0838969_47	Structural annotation	PF05584, MF_01819, TIGR04176, COG3355	NA	NA