UHGV-0870583

Genome information

Genome length 35,697 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0870583
vOTU ID	vOTU-070812
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	SRS1713184\|NODE_47_length_35697_cov_10.718506
BioSample	SAMN04415499
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.06
Jumbo phage	No

Genome content
Genome length	35,697 bps
GC content	41.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.12%
Average CDS length	594.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0870583_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0870583_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0870583_1	UniRef90	UniRef90_A0A0M6WIX4	HNHc domain-containing protein	NA
UHGV-0870583_1	eggNOG-mapper	1405.DJ92_863	HNH endonuclease	NA
UHGV-0870583_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0870583_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0870583_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0870583_2	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0870583_2	eggNOG-mapper	755731.Clo1100_3798	NA	NA
UHGV-0870583_2	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0870583_3	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0870583_3	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0870583_3	eggNOG-mapper	411902.CLOBOL_03891	NA	NA
UHGV-0870583_3	Structural annotation	PF21578	NA	NA
UHGV-0870583_6	PHROG	phrog_8684	NA	unknown function
UHGV-0870583_6	UniRef90	UniRef90_UPI001BC82BF2	YopX family protein	NA
UHGV-0870583_6	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0870583_6	Pfam	PF09643	YopX protein	YopX
UHGV-0870583_6	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0870583_6	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0870583_7	PHROG	phrog_20593	NA	unknown function
UHGV-0870583_8	eggNOG-mapper	476272.RUMHYD_01923	NA	NA
UHGV-0870583_9	Structural annotation	NF011508	NA	NA
UHGV-0870583_11	PHROG	phrog_15077	NA	unknown function
UHGV-0870583_11	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0870583_11	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0870583_11	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0870583_12	PHROG	phrog_23707	NA	unknown function
UHGV-0870583_12	UniRef90	UniRef90_A0A1Q6KU34	NA	NA
UHGV-0870583_12	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0870583_12	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0870583_12	Structural annotation	PF08325, COG4900	NA	NA
UHGV-0870583_13	PHROG	phrog_8470	NA	unknown function
UHGV-0870583_13	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0870583_13	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-0870583_13	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0870583_13	Structural annotation	PF14284	NA	NA
UHGV-0870583_14	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0870583_15	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0870583_15	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0870583_16	KOfam	K14059	int; integrase	NA
UHGV-0870583_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0870583_16	UniRef90	UniRef90_A0A0M6WVP0	Tyr recombinase domain-containing protein	NA
UHGV-0870583_16	eggNOG-mapper	1280698.AUJS01000010_gene818	Belongs to the 'phage' integrase family	NA
UHGV-0870583_16	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0870583_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0870583_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0870583_16	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0870583_17	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0870583_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0870583_17	UniRef90	UniRef90_A0A6L5YHS5	Tyrosine-type recombinase/integrase	NA
UHGV-0870583_17	eggNOG-mapper	397291.C804_01139	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0870583_17	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0870583_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0870583_17	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0870583_17	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0870583_18	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0870583_18	PHROG	phrog_5696	NA	unknown function
UHGV-0870583_18	UniRef90	UniRef90_A0A0M6WYD5	N6_Mtase domain-containing protein	NA
UHGV-0870583_18	eggNOG-mapper	1235457.C404_25710	N-6 DNA Methylase	NA
UHGV-0870583_18	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0870583_18	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0870583_18	Structural annotation	COG0286	NA	NA
UHGV-0870583_21	PHROG	phrog_585	NA	unknown function
UHGV-0870583_21	UniRef90	UniRef90_UPI00035CA235	NA	NA
UHGV-0870583_21	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0870583_21	Pfam	PF10711	NA	DUF2513
UHGV-0870583_21	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0870583_22	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-0870583_24	UniRef90	UniRef90_A0A0M6WHS0	HTH cro/C1-type domain-containing protein	NA
UHGV-0870583_24	eggNOG-mapper	1385512.N784_13400	NA	NA
UHGV-0870583_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0870583_24	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0870583_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0870583_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0870583_25	UniRef90	UniRef90_A0A0M6WJ36	HTH cro/C1-type domain-containing protein	NA
UHGV-0870583_25	eggNOG-mapper	641107.CDLVIII_2059	Helix-turn-helix domain protein	NA
UHGV-0870583_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0870583_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0870583_25	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0870583_26	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0870583_26	PHROG	phrog_8036	NA	unknown function
UHGV-0870583_26	UniRef90	UniRef90_A0A6N2UQZ1	DNA-damage-inducible protein D	NA
UHGV-0870583_26	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-0870583_26	AcrCatalog	cluster_17589	NA	NA
UHGV-0870583_26	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0870583_26	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0870583_26	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0870583_26	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0870583_26	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0870583_27	eggNOG-mapper	411466.ACTODO_00919	cog cog1226	NA
UHGV-0870583_27	COG	COG0664	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases	NA
UHGV-0870583_28	eggNOG-mapper	1408311.JNJM01000007_gene933	NA	NA
UHGV-0870583_28	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0870583_30	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0870583_30	PHROG	phrog_95	integrase	integration and excision
UHGV-0870583_30	UniRef90	UniRef90_B0NAW3	DNA-invertase hin	NA
UHGV-0870583_30	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0870583_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0870583_30	Pfam	PF07508	Recombinase	Recombinase
UHGV-0870583_30	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0870583_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0870583_30	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0870583_31	UniRef90	UniRef90_R5QKX6	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	NA
UHGV-0870583_31	eggNOG-mapper	1449050.JNLE01000003_gene3708	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0870583_31	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0870583_32	PHROG	phrog_13890	NA	unknown function
UHGV-0870583_32	UniRef90	UniRef90_A0A7X5I8W7	Arc family DNA-binding protein	NA
UHGV-0870583_32	eggNOG-mapper	877414.ATWA01000049_gene449	NA	NA
UHGV-0870583_32	Pfam	PF09274	ParG	ParG
UHGV-0870583_33	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0870583_34	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0870583_34	PHROG	phrog_435	endolysin	lysis
UHGV-0870583_34	UniRef90	UniRef90_A0A355TJT7	MurNAc-LAA domain-containing protein	NA
UHGV-0870583_34	eggNOG-mapper	1469948.JPNB01000001_gene537	hmm pf01520	NA
UHGV-0870583_34	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0870583_34	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0870583_34	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0870583_35	PHROG	phrog_199	holin	lysis
UHGV-0870583_35	UniRef90	UniRef90_A0A350VIW1	Holin	NA
UHGV-0870583_35	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0870583_35	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0870583_35	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0870583_35	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0870583_35	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0870583_38	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0870583_38	COG	COG4675	Phage tail collar domain	NA
UHGV-0870583_39	PHROG	phrog_11037	NA	unknown function
UHGV-0870583_39	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0870583_39	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0870583_39	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0870583_39	Structural annotation	PF18013	NA	NA
UHGV-0870583_40	PHROG	phrog_13289	tail protein	tail
UHGV-0870583_40	UniRef90	UniRef90_A0A0M6WI67	Prophage_tail domain-containing protein	NA
UHGV-0870583_40	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0870583_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0870583_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0870583_40	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0870583_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0870583_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0870583_41	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-0870583_41	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0870583_41	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0870583_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0870583_41	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0870583_42	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0870583_42	UniRef90	UniRef90_A0A350VIV1	Phage tail tape measure protein	NA
UHGV-0870583_42	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0870583_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0870583_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0870583_42	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0870583_45	PHROG	phrog_88	major tail protein	tail
UHGV-0870583_45	UniRef90	UniRef90_A0A1Q9J4Y1	Phage tail protein	NA
UHGV-0870583_45	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-0870583_45	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0870583_45	COG	COG5492	NA	NA
UHGV-0870583_45	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0870583_46	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0870583_46	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0870583_46	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0870583_46	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0870583_47	Structural annotation	PF05657	NA	NA
UHGV-0870583_48	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-0870583_48	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0870583_50	PHROG	phrog_10	major head protein	head and packaging
UHGV-0870583_50	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0870583_50	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0870583_50	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0870583_50	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0870583_50	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0870583_50	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0870583_51	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0870583_51	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0870583_51	UniRef90	UniRef90_A0A350VIU3	ATP-dependent Clp protease proteolytic subunit (Fragment)	NA
UHGV-0870583_51	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0870583_51	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0870583_51	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0870583_51	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0870583_52	PHROG	phrog_12	portal protein	head and packaging
UHGV-0870583_52	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0870583_52	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0870583_52	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0870583_52	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0870583_52	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0870583_53	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0870583_53	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0870583_53	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0870583_53	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0870583_53	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0870583_53	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0870583_53	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0870583_54	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0870583_54	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0870583_54	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0870583_54	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0870583_54	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA