UHGV-0960264

Genome information

Genome length 32,447 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0960264
vOTU ID	vOTU-009759
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	SRS2563891\|NODE_31_length_32447_cov_122.101013
BioSample	SAMN07646522
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.27
Jumbo phage	No

Genome content
Genome length	32,447 bps
GC content	46.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.08%
Average CDS length	542.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0960264_1	PHROG	phrog_1066	NA	unknown function
UHGV-0960264_1	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0960264_1	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0960264_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0960264_2	UniRef90	UniRef90_A0A8J6TY49	Terminase large subunit	NA
UHGV-0960264_2	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-0960264_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0960264_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0960264_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0960264_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0960264_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0960264_3	UniRef90	UniRef90_UPI00073E8ED5	phage portal protein	NA
UHGV-0960264_3	eggNOG-mapper	411471.SUBVAR_05850	Phage portal protein	NA
UHGV-0960264_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0960264_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0960264_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0960264_4	KOfam	K06904	NA	NA
UHGV-0960264_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0960264_4	UniRef90	UniRef90_A0A1V5IPN6	Caudovirus prohead protease	NA
UHGV-0960264_4	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0960264_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0960264_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0960264_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0960264_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0960264_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0960264_5	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-0960264_5	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-0960264_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0960264_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0960264_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0960264_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0960264_6	eggNOG-mapper	476272.RUMHYD_02855	NA	NA
UHGV-0960264_7	PHROG	phrog_5223	neck protein	connector
UHGV-0960264_7	UniRef90	UniRef90_UPI00073F29ED	head-tail connector protein	NA
UHGV-0960264_7	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-0960264_7	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0960264_7	Structural annotation	TIGR01560	NA	NA
UHGV-0960264_8	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0960264_8	UniRef90	UniRef90_A0A8J6P6R3	Phage head-tail adapter protein	NA
UHGV-0960264_8	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0960264_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0960264_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0960264_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0960264_9	UniRef90	UniRef90_A0A7V7BBM4	HK97 gp10 family phage protein	NA
UHGV-0960264_9	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0960264_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0960264_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0960264_10	UniRef90	UniRef90_B7GIN5	Phage related protein	NA
UHGV-0960264_10	eggNOG-mapper	491915.Aflv_0670	NA	NA
UHGV-0960264_10	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0960264_11	PHROG	phrog_88	major tail protein	tail
UHGV-0960264_11	UniRef90	UniRef90_A0A1I7JV20	Phage major tail protein, phi13 family	NA
UHGV-0960264_11	eggNOG-mapper	1408311.JNJM01000036_gene51	phage major tail protein, phi13 family	NA
UHGV-0960264_11	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0960264_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0960264_11	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0960264_12	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0960264_12	UniRef90	UniRef90_UPI001E5F056E	Ltp family lipoprotein	NA
UHGV-0960264_12	eggNOG-mapper	913865.DOT_5687	Host cell surface-exposed lipoprotein	NA
UHGV-0960264_12	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0960264_12	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0960264_12	Structural annotation	PF18933, PF02631, MF_02248, MF_01114, NF008627, NF001062, COG5435, COG2137	NA	NA
UHGV-0960264_13	KOfam	K19159	yefM; antitoxin YefM	NA
UHGV-0960264_13	PHROG	phrog_10078	NA	unknown function
UHGV-0960264_13	UniRef90	UniRef90_A0A844IUT6	Antitoxin	NA
UHGV-0960264_13	eggNOG-mapper	861454.HMPREF9099_00764	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0960264_13	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0960264_13	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0960264_13	Structural annotation	PF02604, NF008499, COG2161	NA	NA
UHGV-0960264_14	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-0960264_14	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0960264_14	UniRef90	UniRef90_A0A095YTP4	Putative mRNA interferase YoeB	NA
UHGV-0960264_14	eggNOG-mapper	525282.HMPREF0391_11187	YoeB-like toxin of bacterial type II toxin-antitoxin system	NA
UHGV-0960264_14	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-0960264_14	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-0960264_14	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-0960264_14	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-0960264_16	PHROG	phrog_709	NA	unknown function
UHGV-0960264_16	eggNOG-mapper	396034.A6XMK4_9CAUD	NA	NA
UHGV-0960264_16	Structural annotation	PF11836	NA	NA
UHGV-0960264_17	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0960264_17	PHROG	phrog_23464	NA	unknown function
UHGV-0960264_17	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-0960264_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0960264_17	Structural annotation	COG5280	NA	NA
UHGV-0960264_18	UniRef90	UniRef90_R6EKZ3	Putative phage protein	NA
UHGV-0960264_18	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0960264_19	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0960264_19	PHROG	phrog_819	tail protein	tail
UHGV-0960264_19	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0960264_19	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0960264_21	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0960264_22	PHROG	phrog_4105	NA	unknown function
UHGV-0960264_22	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-0960264_23	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0960264_23	PHROG	phrog_435	endolysin	lysis
UHGV-0960264_23	UniRef90	UniRef90_UPI00164A7888	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0960264_23	eggNOG-mapper	767817.Desgi_4433	N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family	NA
UHGV-0960264_23	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0960264_23	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0960264_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0960264_23	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0960264_24	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0960264_24	UniRef90	UniRef90_W1I6Y1	Uncultured bacterium extrachromosomal DNA RGI01389	NA
UHGV-0960264_24	eggNOG-mapper	411490.ANACAC_02385	COG NOG12663 non supervised orthologous group	NA
UHGV-0960264_24	Structural annotation	PF14236, MF_02210, NF007025, COG1247	NA	NA
UHGV-0960264_25	PHROG	phrog_1129	holin	lysis
UHGV-0960264_25	UniRef90	UniRef90_A0A358ASD1	Holin	NA
UHGV-0960264_25	eggNOG-mapper	1410668.JNKC01000001_gene1676	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0960264_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0960264_25	Structural annotation	PF06946	NA	NA
UHGV-0960264_26	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0960264_26	UniRef90	UniRef90_A0A136Q0D0	Abi-like protein	NA
UHGV-0960264_26	eggNOG-mapper	1051632.TPY_0898	Abi-like protein	NA
UHGV-0960264_26	PADLOC	AbiD	AbiD	Abi
UHGV-0960264_26	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0960264_26	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0960264_26	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0960264_29	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0960264_29	PHROG	phrog_4646	transposase	integration and excision
UHGV-0960264_29	UniRef90	UniRef90_A0A355V0Y6	IS30 family transposase (Fragment)	NA
UHGV-0960264_29	eggNOG-mapper	1235835.C814_01045	PFAM Integrase catalytic region	NA
UHGV-0960264_29	Pfam	PF00665	Integrase core domain	rve
UHGV-0960264_29	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-0960264_29	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0960264_29	Structural annotation	PF00665, NF033563, COG2826	NA	NA
UHGV-0960264_30	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0960264_30	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0960264_30	UniRef90	UniRef90_R6TS32	HTH_38 domain-containing protein	NA
UHGV-0960264_30	eggNOG-mapper	1408438.JADD01000013_gene1752	transposase and inactivated derivatives, IS30 family	NA
UHGV-0960264_30	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0960264_30	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0960264_30	Structural annotation	PF13384	NA	NA
UHGV-0960264_36	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0960264_36	UniRef90	UniRef90_UPI001C11D144	ERF family protein	NA
UHGV-0960264_36	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0960264_36	Pfam	PF04404	ERF superfamily	ERF
UHGV-0960264_37	PHROG	phrog_1389	NA	unknown function
UHGV-0960264_37	eggNOG-mapper	1444310.JANV01000162_gene1188	NA	NA
UHGV-0960264_37	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0960264_38	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0960264_38	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0960264_38	UniRef90	UniRef90_A0A136Q8F2	HNH domain-containing protein	NA
UHGV-0960264_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0960264_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0960264_39	PHROG	phrog_4973	NA	unknown function
UHGV-0960264_39	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-0960264_39	eggNOG-mapper	935261.JAGL01000009_gene1175	Helix-turn-helix domain	NA
UHGV-0960264_39	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0960264_39	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0960264_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0960264_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0960264_40	UniRef90	UniRef90_A0A136Q1B8	Single-stranded DNA-binding protein	NA
UHGV-0960264_40	eggNOG-mapper	1392491.JIAE01000001_gene2290	Single-stranded DNA-binding protein	NA
UHGV-0960264_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0960264_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0960264_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0960264_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0960264_40	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0960264_41	PHROG	phrog_15768	NA	unknown function
UHGV-0960264_41	UniRef90	UniRef90_A0A1Y4JPQ2	NA	NA
UHGV-0960264_41	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0960264_41	Pfam	PF19808	NA	DUF6291
UHGV-0960264_41	Structural annotation	PF19808	NA	NA
UHGV-0960264_42	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0960264_42	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0960264_42	UniRef90	UniRef90_A0A1I5IYN3	AAA domain-containing protein	NA
UHGV-0960264_42	eggNOG-mapper	1232453.BAIF02000057_gene1145	DNA replication initiation	NA
UHGV-0960264_42	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0960264_42	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0960264_44	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0960264_44	UniRef90	UniRef90_A0A136Q8L7	Putative holliday junction resolvase Hjc (Fragment)	NA
UHGV-0960264_44	eggNOG-mapper	411490.ANACAC_00802	NA	NA
UHGV-0960264_44	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0960264_48	UniRef90	UniRef90_U4R412	J domain-containing protein	NA
UHGV-0960264_48	eggNOG-mapper	138119.DSY2202	Heat shock protein DnaJ domain protein	NA
UHGV-0960264_48	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0960264_48	Structural annotation	PF00226	NA	NA
UHGV-0960264_51	PHROG	phrog_25385	NA	unknown function
UHGV-0960264_51	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0960264_54	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-0960264_56	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0960264_56	UniRef90	UniRef90_UPI00073EFDD7	HNH endonuclease	NA
UHGV-0960264_56	eggNOG-mapper	887929.HMP0721_1270	HNH nucleases	NA
UHGV-0960264_56	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0960264_56	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA