UHGV-1005089

Genome information

Genome length 29,238 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-1005089
vOTU ID	vOTU-063777
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	SRS2267613\|NODE_36_length_29238_cov_39.097317
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.84
Jumbo phage	No

Genome content
Genome length	29,238 bps
GC content	49.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.65%
Average CDS length	543.77 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1005089_1	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1005089_1	UniRef90	UniRef90_UPI00156E0A7C	HNH endonuclease	NA
UHGV-1005089_1	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-1005089_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1005089_2	UniRef90	UniRef90_A0A413B185	NA	NA
UHGV-1005089_2	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-1005089_2	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1005089_4	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1005089_4	UniRef90	UniRef90_UPI001BBBA8BA	NA	NA
UHGV-1005089_4	eggNOG-mapper	521000.PROVRETT_06001	NA	NA
UHGV-1005089_4	Pfam	PF14359	NA	DUF4406
UHGV-1005089_4	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1005089_4	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-1005089_6	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-1005089_7	UniRef90	UniRef90_UPI001594A542	NA	NA
UHGV-1005089_7	eggNOG-mapper	742733.HMPREF9469_00921	NA	NA
UHGV-1005089_7	Structural annotation	NF041588	NA	NA
UHGV-1005089_8	PHROG	phrog_15198	NA	unknown function
UHGV-1005089_8	UniRef90	UniRef90_A0A1H4JD22	NA	NA
UHGV-1005089_8	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-1005089_9	PHROG	phrog_17690	NA	unknown function
UHGV-1005089_9	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-1005089_9	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-1005089_10	PHROG	phrog_15077	NA	unknown function
UHGV-1005089_10	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-1005089_11	PHROG	phrog_7566	NA	unknown function
UHGV-1005089_11	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-1005089_12	eggNOG-mapper	411468.CLOSCI_00555	NA	NA
UHGV-1005089_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1005089_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1005089_13	UniRef90	UniRef90_A0A7G9G0M5	Single-stranded DNA-binding protein	NA
UHGV-1005089_13	eggNOG-mapper	511680.BUTYVIB_00906	Single-strand binding protein family	NA
UHGV-1005089_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1005089_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1005089_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1005089_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1005089_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1005089_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1005089_15	UniRef90	UniRef90_F3AAS5	RNase H type-1 domain-containing protein	NA
UHGV-1005089_15	eggNOG-mapper	573065.Astex_1568	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-1005089_15	Pfam	PF00075	RNase H	RNase_H
UHGV-1005089_15	COG	COG0328	Ribonuclease HI	NA
UHGV-1005089_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1005089_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1005089_16	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-1005089_16	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-1005089_16	Structural annotation	PF21578	NA	NA
UHGV-1005089_20	UniRef90	UniRef90_A0A3N1XLV2	DNA-directed RNA polymerase subunit M/transcription elongation factor TFIIS	NA
UHGV-1005089_20	eggNOG-mapper	180332.JTGN01000007_gene3778	NA	NA
UHGV-1005089_21	eggNOG-mapper	1235799.C818_01423	oxidoreductase activity	NA
UHGV-1005089_21	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-1005089_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1005089_22	PHROG	phrog_435	endolysin	lysis
UHGV-1005089_22	UniRef90	UniRef90_A0A3A9BMQ4	MurNAc-LAA domain-containing protein	NA
UHGV-1005089_22	eggNOG-mapper	1408437.JNJN01000039_gene391	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1005089_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1005089_22	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1005089_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1005089_23	PHROG	phrog_1129	holin	lysis
UHGV-1005089_23	UniRef90	UniRef90_UPI001C1096AE	phage holin family protein	NA
UHGV-1005089_23	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1005089_23	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1005089_23	Structural annotation	PF06946	NA	NA
UHGV-1005089_24	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1005089_24	PHROG	phrog_5182	endolysin	lysis
UHGV-1005089_24	UniRef90	UniRef90_A0A7G9G6X7	Amidase	NA
UHGV-1005089_24	eggNOG-mapper	1286171.EAL2_c05470	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1005089_24	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1005089_24	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1005089_24	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1005089_24	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-1005089_25	PHROG	phrog_1129	holin	lysis
UHGV-1005089_25	UniRef90	UniRef90_A0A415MF35	Holin	NA
UHGV-1005089_25	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1005089_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1005089_25	Structural annotation	PF06946	NA	NA
UHGV-1005089_26	PHROG	phrog_937	hemolysin	other
UHGV-1005089_26	UniRef90	UniRef90_A0A385E0Y4	Hemolysin	NA
UHGV-1005089_26	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA
UHGV-1005089_28	PHROG	phrog_13589	NA	unknown function
UHGV-1005089_28	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-1005089_30	PHROG	phrog_1084	NA	unknown function
UHGV-1005089_30	eggNOG-mapper	428125.CLOLEP_01432	NA	NA
UHGV-1005089_30	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-1005089_31	PHROG	phrog_5811	NA	unknown function
UHGV-1005089_31	eggNOG-mapper	1469948.JPNB01000001_gene705	Glycine rich protein	NA
UHGV-1005089_32	PHROG	phrog_7064	tail protein	tail
UHGV-1005089_32	eggNOG-mapper	1235800.C819_04023	NA	NA
UHGV-1005089_32	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-1005089_33	PHROG	phrog_20385	minor tail protein	tail
UHGV-1005089_33	eggNOG-mapper	397287.C807_03967	NA	NA
UHGV-1005089_33	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1005089_34	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1005089_34	eggNOG-mapper	12390.Q77MU4_9CAUD	peptidoglycan catabolic process	NA
UHGV-1005089_34	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-1005089_35	PHROG	phrog_1633	NA	unknown function
UHGV-1005089_35	UniRef90	UniRef90_A0A4U9XLC7	NA	NA
UHGV-1005089_35	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-1005089_35	Pfam	PF17318	NA	DUF5361
UHGV-1005089_35	Structural annotation	PF17318	NA	NA
UHGV-1005089_36	PHROG	phrog_1526	NA	unknown function
UHGV-1005089_36	eggNOG-mapper	879308.HMPREF9130_1240	NA	NA
UHGV-1005089_37	PHROG	phrog_117	major tail protein	tail
UHGV-1005089_37	UniRef90	UniRef90_A0A844E2C0	Phage tail protein	NA
UHGV-1005089_37	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-1005089_37	COG	COG5492	NA	NA
UHGV-1005089_37	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1005089_38	PHROG	phrog_123	tail terminator	connector
UHGV-1005089_38	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-1005089_38	Structural annotation	PF06141	NA	NA
UHGV-1005089_39	PHROG	phrog_387	neck protein	connector
UHGV-1005089_39	UniRef90	UniRef90_A0A380KNT4	NA	NA
UHGV-1005089_39	eggNOG-mapper	1423775.BAMN01000011_gene600	NA	NA
UHGV-1005089_40	PHROG	phrog_501	head closure Hc1	connector
UHGV-1005089_40	eggNOG-mapper	665950.HMPREF1025_02528	NA	NA
UHGV-1005089_40	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1005089_41	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1005089_41	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1005089_41	Pfam	PF09355	NA	Phage_Gp19
UHGV-1005089_41	Structural annotation	PF09355	NA	NA
UHGV-1005089_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-1005089_43	UniRef90	UniRef90_A0A844E6Z2	Phage major capsid protein	NA
UHGV-1005089_43	eggNOG-mapper	205876.Q855V6_9CAUD	peptidase activity	NA
UHGV-1005089_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1005089_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1005089_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1005089_44	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-1005089_44	UniRef90	UniRef90_A0A412EZF6	NA	NA
UHGV-1005089_44	eggNOG-mapper	1408304.JAHA01000007_gene1323	NA	NA
UHGV-1005089_44	Pfam	PF14265	NA	DUF4355
UHGV-1005089_44	Structural annotation	PF14265	NA	NA
UHGV-1005089_45	PHROG	phrog_13199	NA	unknown function
UHGV-1005089_45	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-1005089_46	PHROG	phrog_918	NA	unknown function
UHGV-1005089_46	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-1005089_46	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-1005089_46	Pfam	PF19791	NA	DUF6275
UHGV-1005089_46	Structural annotation	PF19791	NA	NA
UHGV-1005089_47	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1005089_47	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-1005089_47	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-1005089_47	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-1005089_48	PHROG	phrog_104	portal protein	head and packaging
UHGV-1005089_48	UniRef90	UniRef90_A0A174L3Q9	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1005089_48	eggNOG-mapper	1123263.AUKY01000112_gene2059	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1005089_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1005089_48	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1005089_49	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1005089_49	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-1005089_49	eggNOG-mapper	1123263.AUKY01000112_gene2060	phage terminase, large subunit	NA
UHGV-1005089_49	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1005089_49	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1005089_49	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-1005089_50	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-1005089_50	Structural annotation	PF19962	NA	NA