UHGV-1049248

Genome information

Genome length 30,794 bps

CDS count 47

Completeness 84.13% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-1049248
vOTU ID	vOTU-024521
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	SRS2563920\|NODE_19_length_30794_cov_31.818179
BioSample	SAMN07646504
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.56
Jumbo phage	No

Genome content
Genome length	30,794 bps
GC content	47.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	94.35%
Average CDS length	623.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1049248_3	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1049248_3	UniRef90	UniRef90_UPI0006B43CFD	YqaJ viral recombinase family protein	NA
UHGV-1049248_3	eggNOG-mapper	525255.HMPREF0077_0419	YqaJ-like viral recombinase domain	NA
UHGV-1049248_3	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1049248_3	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1049248_3	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1049248_3	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1049248_4	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1049248_4	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1049248_4	UniRef90	UniRef90_UPI0006B4EE74	recombinase RecT	NA
UHGV-1049248_4	eggNOG-mapper	1121947.AUHK01000002_gene917	RecT family	NA
UHGV-1049248_4	Pfam	PF03837	RecT family	RecT
UHGV-1049248_4	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1049248_4	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1049248_4	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1049248_5	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1049248_5	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1049248_5	UniRef90	UniRef90_UPI000A10CDA8	NA	NA
UHGV-1049248_5	eggNOG-mapper	511437.Lbuc_1442	NA	NA
UHGV-1049248_5	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1049248_5	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1049248_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1049248_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1049248_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1049248_8	UniRef90	UniRef90_UPI000833193D	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1049248_8	eggNOG-mapper	195103.CPF_0942	Endodeoxyribonuclease RusA	NA
UHGV-1049248_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1049248_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1049248_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1049248_9	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1049248_9	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-1049248_9	UniRef90	UniRef90_UPI0005629965	N-6 DNA methylase	NA
UHGV-1049248_9	eggNOG-mapper	1313301.AUGC01000002_gene1900	type I restriction-modification system	NA
UHGV-1049248_9	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-1049248_9	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1049248_9	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1049248_10	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1049248_10	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-1049248_10	UniRef90	UniRef90_UPI0018A15675	N-6 DNA methylase	NA
UHGV-1049248_10	eggNOG-mapper	1278971.AOGF01000034_gene1772	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-1049248_10	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1049248_10	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1049248_11	UniRef90	UniRef90_UPI0005CCA1A4	restriction endonuclease subunit S	NA
UHGV-1049248_11	eggNOG-mapper	592010.GCWU000182_001449	Type I restriction modification DNA specificity domain	NA
UHGV-1049248_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1049248_12	UniRef90	UniRef90_UPI00138E09F6	ECF-type sigma factor	NA
UHGV-1049248_12	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1049248_12	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1049248_13	PHROG	phrog_1281	NA	unknown function
UHGV-1049248_13	UniRef90	UniRef90_UPI0006B6530D	NA	NA
UHGV-1049248_13	eggNOG-mapper	875454.BAEW01000002_gene485	NA	NA
UHGV-1049248_13	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1049248_13	COG	COG3600	NA	NA
UHGV-1049248_13	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1049248_14	eggNOG-mapper	875454.BAEW01000002_gene484	NA	NA
UHGV-1049248_15	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-1049248_15	UniRef90	UniRef90_UPI0008346AA2	phBC6A51 family helix-turn-helix protein	NA
UHGV-1049248_15	eggNOG-mapper	279808.SH2359	NA	NA
UHGV-1049248_15	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-1049248_15	Structural annotation	PF13022, COG3677	NA	NA
UHGV-1049248_16	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1049248_16	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-1049248_16	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-1049248_16	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-1049248_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-1049248_17	UniRef90	UniRef90_UPI000835C042	phage portal protein	NA
UHGV-1049248_17	eggNOG-mapper	1347392.CCEZ01000005_gene1230	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1049248_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1049248_17	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1049248_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1049248_18	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1049248_18	UniRef90	UniRef90_UPI000831AD37	minor capsid protein	NA
UHGV-1049248_18	eggNOG-mapper	1120978.KB894087_gene432	Phage Mu protein F like protein	NA
UHGV-1049248_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1049248_18	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1049248_18	COG	COG2369	NA	NA
UHGV-1049248_19	UniRef90	UniRef90_UPI0002D2AA00	NA	NA
UHGV-1049248_19	eggNOG-mapper	1027396.LMOSA_10410	NA	NA
UHGV-1049248_20	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1049248_20	UniRef90	UniRef90_A0A847D8L3	NA	NA
UHGV-1049248_20	eggNOG-mapper	1347392.CCEZ01000005_gene1235	NA	NA
UHGV-1049248_20	Pfam	PF14265	NA	DUF4355
UHGV-1049248_20	Structural annotation	PF14265	NA	NA
UHGV-1049248_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-1049248_21	UniRef90	UniRef90_A0A847D7U9	Big_12 domain-containing protein	NA
UHGV-1049248_21	eggNOG-mapper	1232430.CAVG010000113_gene1021	NA	NA
UHGV-1049248_21	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1049248_22	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1049248_22	UniRef90	UniRef90_UPI000831BF2E	phage head-tail connector protein	NA
UHGV-1049248_22	eggNOG-mapper	1120978.KB894087_gene438	Phage gp6-like head-tail connector protein	NA
UHGV-1049248_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1049248_22	Structural annotation	PF05135	NA	NA
UHGV-1049248_23	PHROG	phrog_348	minor head protein	head and packaging
UHGV-1049248_23	eggNOG-mapper	1158609.I586_00086	NA	NA
UHGV-1049248_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1049248_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1049248_24	UniRef90	UniRef90_UPI00096AD009	HK97 gp10 family phage protein	NA
UHGV-1049248_24	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1049248_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1049248_24	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1049248_24	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1049248_25	PHROG	phrog_176	tail terminator	connector
UHGV-1049248_25	UniRef90	UniRef90_UPI00082F8614	NA	NA
UHGV-1049248_25	eggNOG-mapper	1423724.BAMM01000023_gene1906	NA	NA
UHGV-1049248_25	Structural annotation	PF11367	NA	NA
UHGV-1049248_26	PHROG	phrog_238	major tail protein	tail
UHGV-1049248_26	UniRef90	UniRef90_UPI00082E270F	phage major tail protein, TP901-1 family	NA
UHGV-1049248_26	eggNOG-mapper	35241.Q38612_BPTU2	Phage major tail protein 2	NA
UHGV-1049248_26	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1049248_26	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1049248_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1049248_27	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1049248_27	UniRef90	UniRef90_O34069	ORF38	NA
UHGV-1049248_27	eggNOG-mapper	85154.O34069_BPO12	Pfam:Phage_TAC_12	NA
UHGV-1049248_27	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1049248_27	Structural annotation	PF12363	NA	NA
UHGV-1049248_28	eggNOG-mapper	1139219.I569_01371	NA	NA
UHGV-1049248_29	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1049248_29	UniRef90	UniRef90_UPI00082B78B3	phage tail tape measure protein	NA
UHGV-1049248_29	eggNOG-mapper	59241.TMP_BPDP1	peptidoglycan catabolic process	NA
UHGV-1049248_29	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1049248_29	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1049248_29	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1049248_30	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1049248_30	UniRef90	UniRef90_UPI0008374D6A	phage tail family protein	NA
UHGV-1049248_30	eggNOG-mapper	764561.D7RWD9_9CAUD	Phage tail protein	NA
UHGV-1049248_30	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1049248_30	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1049248_30	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1049248_31	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-1049248_31	UniRef90	UniRef90_UPI0009ECCFC9	phage tail protein	NA
UHGV-1049248_31	eggNOG-mapper	879308.HMPREF9130_1247	Phage minor structural protein	NA
UHGV-1049248_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1049248_31	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1049248_31	COG	COG4926	Phage-related protein	NA
UHGV-1049248_31	Structural annotation	PF06605, PF16838, TIGR01665, COG4926	NA	NA
UHGV-1049248_32	PHROG	phrog_2712	tail fiber protein	tail
UHGV-1049248_32	eggNOG-mapper	1449351.RISW2_03105	NA	NA
UHGV-1049248_35	KOfam	K07273	acm; lysozyme	NA
UHGV-1049248_35	PHROG	phrog_291	endolysin	lysis
UHGV-1049248_35	UniRef90	UniRef90_A0A4D6BGJ6	Lysozyme	NA
UHGV-1049248_35	eggNOG-mapper	883114.HMPREF9709_01178	hydrolase family 25	NA
UHGV-1049248_35	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1049248_35	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-1049248_35	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1049248_35	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-1049248_36	PHROG	phrog_881	holin	lysis
UHGV-1049248_36	UniRef90	UniRef90_UPI000493114A	holin	NA
UHGV-1049248_36	eggNOG-mapper	1158614.I592_02317	Putative phage holin Dp-1	NA
UHGV-1049248_36	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1049248_36	Structural annotation	PF16938	NA	NA
UHGV-1049248_37	PHROG	phrog_30113	NA	unknown function
UHGV-1049248_37	UniRef90	UniRef90_UPI000F8F73B8	NA	NA
UHGV-1049248_37	eggNOG-mapper	525309.HMPREF0494_1614	NA	NA
UHGV-1049248_37	Pfam	PF12686	NA	DUF3800
UHGV-1049248_37	Structural annotation	PF01351, MF_00052_A, TIGR00729, COG1039	NA	NA
UHGV-1049248_39	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1049248_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1049248_39	UniRef90	UniRef90_A0A095XHT0	XRE family transcriptional regulator	NA
UHGV-1049248_39	eggNOG-mapper	525254.HMPREF0072_0271	DNA-binding helix-turn-helix protein	NA
UHGV-1049248_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1049248_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1049248_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1049248_41	UniRef90	UniRef90_UPI00083390B7	helix-turn-helix domain-containing protein	NA
UHGV-1049248_42	PHROG	phrog_1233	NA	unknown function
UHGV-1049248_42	UniRef90	UniRef90_UPI000BF2C991	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1049248_42	eggNOG-mapper	713605.ADHG01000003_gene719	NA	NA
UHGV-1049248_42	Structural annotation	PF06114	NA	NA
UHGV-1049248_43	PHROG	phrog_5079	NA	unknown function
UHGV-1049248_43	UniRef90	UniRef90_A0A090I2F2	Putative secreted protein	NA
UHGV-1049248_43	eggNOG-mapper	875454.BAEW01000002_gene495	NA	NA