UHGV-1218274

Genome information

vOTU vOTU-020795

Genome length 28,088 bps

CDS count 49

Completeness 78.27% (medium-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-1218274
vOTU ID	vOTU-020795
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	SRS2563946\|NODE_26_length_28088_cov_29.305283
BioSample	SAMN07646541
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.77
Jumbo phage	No

Genome content
Genome length	28,088 bps
GC content	56.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.35%
Average CDS length	538.04 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1218274_1	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-1218274_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1218274_2	PHROG	phrog_104	portal protein	head and packaging
UHGV-1218274_2	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1218274_3	PHROG	phrog_104	portal protein	head and packaging
UHGV-1218274_3	UniRef90	UniRef90_A0A316PMS0	Phage portal protein	NA
UHGV-1218274_3	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1218274_3	Structural annotation	PF05133, MF_04135, TIGR01538, COG4695	NA	NA
UHGV-1218274_4	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1218274_4	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-1218274_4	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-1218274_4	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-1218274_6	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1218274_6	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-1218274_6	eggNOG-mapper	1123263.AUKY01000096_gene1821	NA	NA
UHGV-1218274_8	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1218274_8	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-1218274_8	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-1218274_8	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1218274_8	Structural annotation	PF06810	NA	NA
UHGV-1218274_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-1218274_9	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-1218274_9	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-1218274_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1218274_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1218274_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1218274_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1218274_11	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1218274_11	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1218274_11	Structural annotation	PF09355	NA	NA
UHGV-1218274_12	PHROG	phrog_501	head closure Hc1	connector
UHGV-1218274_12	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-1218274_12	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1218274_13	PHROG	phrog_387	neck protein	connector
UHGV-1218274_13	UniRef90	UniRef90_A0A380KNT4	NA	NA
UHGV-1218274_13	eggNOG-mapper	1121864.OMO_02156	NA	NA
UHGV-1218274_14	PHROG	phrog_123	tail terminator	connector
UHGV-1218274_14	UniRef90	UniRef90_A0A139NAV0	Phage-associated protein	NA
UHGV-1218274_14	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-1218274_14	Structural annotation	PF06141	NA	NA
UHGV-1218274_15	PHROG	phrog_117	major tail protein	tail
UHGV-1218274_15	UniRef90	UniRef90_A0A1Y4TGT6	Phage tail protein	NA
UHGV-1218274_15	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-1218274_15	COG	COG5492	NA	NA
UHGV-1218274_15	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1218274_16	PHROG	phrog_1526	NA	unknown function
UHGV-1218274_16	eggNOG-mapper	1423775.BAMN01000011_gene597	NA	NA
UHGV-1218274_17	PHROG	phrog_1633	NA	unknown function
UHGV-1218274_17	UniRef90	UniRef90_UPI001939D555	NA	NA
UHGV-1218274_17	eggNOG-mapper	883110.HMPREF9260_00651	NA	NA
UHGV-1218274_17	Pfam	PF17318	NA	DUF5361
UHGV-1218274_17	Structural annotation	PF17318	NA	NA
UHGV-1218274_18	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1218274_18	UniRef90	UniRef90_UPI001CC012E9	phage tail protein	NA
UHGV-1218274_18	eggNOG-mapper	585203.SMSK564_1276	phage tail tape measure protein	NA
UHGV-1218274_18	COG	COG1511	NA	NA
UHGV-1218274_18	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-1218274_19	PHROG	phrog_1194	NA	unknown function
UHGV-1218274_19	eggNOG-mapper	411471.SUBVAR_06933	NA	NA
UHGV-1218274_19	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-1218274_20	PHROG	phrog_18190	NA	unknown function
UHGV-1218274_20	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-1218274_20	Structural annotation	PF05954, PF00629, PF03424, NF033848, NF033675, COG4379	NA	NA
UHGV-1218274_21	PHROG	phrog_18444	NA	unknown function
UHGV-1218274_21	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-1218274_21	eggNOG-mapper	1294142.CINTURNW_1707	NA	NA
UHGV-1218274_23	Structural annotation	PF12245	NA	NA
UHGV-1218274_24	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-1218274_25	PHROG	phrog_13589	NA	unknown function
UHGV-1218274_25	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1218274_27	PHROG	phrog_19111	NA	unknown function
UHGV-1218274_27	eggNOG-mapper	756499.Desde_3162	nuclear chromosome segregation	NA
UHGV-1218274_27	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1218274_28	PHROG	phrog_24267	NA	unknown function
UHGV-1218274_28	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-1218274_28	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-1218274_28	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-1218274_28	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-1218274_29	KOfam	K07273	acm; lysozyme	NA
UHGV-1218274_29	PHROG	phrog_291	endolysin	lysis
UHGV-1218274_29	UniRef90	UniRef90_A0A367G061	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-1218274_29	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-1218274_29	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1218274_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1218274_29	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1218274_29	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-1218274_30	PHROG	phrog_1863	NA	unknown function
UHGV-1218274_30	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-1218274_31	PHROG	phrog_1129	holin	lysis
UHGV-1218274_31	UniRef90	UniRef90_A0A367FT42	Enolase	NA
UHGV-1218274_31	eggNOG-mapper	693746.OBV_13280	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1218274_31	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1218274_31	Structural annotation	PF06946	NA	NA
UHGV-1218274_32	KOfam	K14059	int; integrase	NA
UHGV-1218274_32	PHROG	phrog_1	integrase	integration and excision
UHGV-1218274_32	UniRef90	UniRef90_UPI00195B6EEA	site-specific integrase	NA
UHGV-1218274_32	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-1218274_32	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1218274_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1218274_32	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1218274_32	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1218274_33	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-1218274_33	PHROG	phrog_10292	NA	unknown function
UHGV-1218274_33	UniRef90	UniRef90_UPI001916763D	TM2 domain-containing protein	NA
UHGV-1218274_33	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-1218274_33	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-1218274_33	Pfam	PF05154	TM2 domain	TM2
UHGV-1218274_33	COG	COG2314	NA	NA
UHGV-1218274_33	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-1218274_34	PHROG	phrog_87	metallo-protease	other
UHGV-1218274_34	UniRef90	UniRef90_UPI001C3AA0FC	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1218274_34	eggNOG-mapper	663278.Ethha_2376	NA	NA
UHGV-1218274_34	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1218274_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1218274_35	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1218274_35	UniRef90	UniRef90_A0A412UNH6	XRE family transcriptional regulator	NA
UHGV-1218274_35	eggNOG-mapper	911104.AEKT01000001_gene15	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1218274_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1218274_35	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1218274_35	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1218274_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1218274_36	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-1218274_36	UniRef90	UniRef90_A0A6N2UL50	Helix-turn-helix	NA
UHGV-1218274_36	eggNOG-mapper	1504823.CCMM01000008_gene1079	sequence-specific DNA binding	NA
UHGV-1218274_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1218274_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1218274_36	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1218274_37	PHROG	phrog_2232	NA	unknown function
UHGV-1218274_37	UniRef90	UniRef90_UPI00156E138F	NA	NA
UHGV-1218274_37	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-1218274_37	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-1218274_37	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-1218274_39	UniRef90	UniRef90_A0A367GHD7	HTH_17 domain-containing protein	NA
UHGV-1218274_39	Pfam	PF12728	Helix-turn-helix domain	HTH_17