UHGV-1248736

Genome information

Genome length 26,257 bps

CDS count 34

Completeness 65.03% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-1248736
vOTU ID	vOTU-023396
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	SRS2563937\|NODE_19_length_26257_cov_18.158423
BioSample	SAMN07646552
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.52
Jumbo phage	No

Genome content
Genome length	26,257 bps
GC content	54.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	93.87%
Average CDS length	730.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1248736_1	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1248736_1	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1248736_1	UniRef90	UniRef90_UPI00145757BC	DNA polymerase III subunit epsilon	NA
UHGV-1248736_1	eggNOG-mapper	1121333.JMLH01000063_gene1384	SWIM zinc finger	NA
UHGV-1248736_1	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1248736_1	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1248736_1	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-1248736_1	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-1248736_1	Structural annotation	PF13361, PF00533, MF_00157, NF008746, COG2925	NA	NA
UHGV-1248736_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1248736_4	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1248736_4	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-1248736_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1248736_4	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1248736_4	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1248736_5	KOfam	K14059	int; integrase	NA
UHGV-1248736_5	PHROG	phrog_1	integrase	integration and excision
UHGV-1248736_5	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-1248736_5	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-1248736_5	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1248736_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1248736_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1248736_5	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1248736_6	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1248736_7	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1248736_8	PHROG	phrog_16490	NA	unknown function
UHGV-1248736_8	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1248736_11	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-1248736_11	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-1248736_11	Pfam	PF09274	ParG	ParG
UHGV-1248736_11	Structural annotation	PF10723	NA	NA
UHGV-1248736_14	PHROG	phrog_15303	NA	unknown function
UHGV-1248736_16	KOfam	K07273	acm; lysozyme	NA
UHGV-1248736_16	PHROG	phrog_291	endolysin	lysis
UHGV-1248736_16	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-1248736_16	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-1248736_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1248736_16	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1248736_16	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-1248736_17	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-1248736_17	COG	COG5434	Polygalacturonase	NA
UHGV-1248736_19	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1248736_19	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-1248736_19	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1248736_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1248736_19	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1248736_19	COG	COG4926	Phage-related protein	NA
UHGV-1248736_19	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1248736_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1248736_20	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-1248736_20	eggNOG-mapper	439292.Bsel_2995	tail component	NA
UHGV-1248736_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-1248736_20	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1248736_21	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1248736_21	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-1248736_21	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-1248736_21	eggNOG-mapper	1216932.CM240_0683	tape measure	NA
UHGV-1248736_21	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1248736_21	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1248736_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1248736_21	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1248736_23	eggNOG-mapper	1286171.EAL2_c05960	NA	NA
UHGV-1248736_24	PHROG	phrog_88	major tail protein	tail
UHGV-1248736_24	UniRef90	UniRef90_A0A7U9IBX1	Phage major tail protein, phi13 family	NA
UHGV-1248736_24	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1248736_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1248736_24	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1248736_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1248736_25	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-1248736_25	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-1248736_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1248736_25	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1248736_25	Structural annotation	TIGR01725	NA	NA
UHGV-1248736_26	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-1248736_26	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1248736_27	PHROG	phrog_19734	NA	unknown function
UHGV-1248736_27	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-1248736_27	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-1248736_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1248736_28	PHROG	phrog_749	NA	unknown function
UHGV-1248736_28	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-1248736_28	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-1248736_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-1248736_29	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-1248736_29	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1248736_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1248736_29	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1248736_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1248736_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1248736_29	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1248736_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1248736_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1248736_30	UniRef90	UniRef90_A0A0H5SII2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1248736_30	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1248736_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1248736_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1248736_30	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1248736_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-1248736_31	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-1248736_31	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1248736_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1248736_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1248736_31	Structural annotation	PF04860, TIGR01537, COG4695	NA	NA
UHGV-1248736_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-1248736_32	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-1248736_32	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1248736_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1248736_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1248736_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1248736_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1248736_33	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-1248736_33	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-1248736_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1248736_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1248736_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA