UHGV-1278863

Genome information

vOTU vOTU-020813

Genome length 35,284 bps

CDS count 64

Completeness 87.41% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-1278863
vOTU ID	vOTU-020813
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	SRS415869\|NODE_91_length_35284_cov_3.616367
BioSample	SAMN02044695
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.23
Jumbo phage	No

Genome content
Genome length	35,284 bps
GC content	50.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	88.04%
Average CDS length	489.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1278863_1	COG	COG2771	DNA-binding transcriptional regulator, CsgD family	NA
UHGV-1278863_2	PHROG	phrog_5765	NA	unknown function
UHGV-1278863_2	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-1278863_2	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-1278863_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1278863_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1278863_5	UniRef90	UniRef90_A0A4D7AHN1	Helix-turn-helix domain-containing protein	NA
UHGV-1278863_5	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1278863_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1278863_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1278863_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1278863_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1278863_9	PHROG	phrog_3154	NA	unknown function
UHGV-1278863_10	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-1278863_10	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1278863_10	Structural annotation	PF13542	NA	NA
UHGV-1278863_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1278863_12	PHROG	phrog_10250	NA	unknown function
UHGV-1278863_12	UniRef90	UniRef90_UPI000462EB3C	PBSX family phage terminase large subunit	NA
UHGV-1278863_12	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1278863_12	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1278863_12	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1278863_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-1278863_12	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1278863_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-1278863_13	UniRef90	UniRef90_UPI001AA0B7FF	phage portal protein	NA
UHGV-1278863_13	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1278863_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1278863_15	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1278863_15	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-1278863_15	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1278863_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1278863_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1278863_15	COG	COG2369	NA	NA
UHGV-1278863_15	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1278863_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1278863_16	UniRef90	UniRef90_UPI001411BC8C	HK97 gp10 family phage protein	NA
UHGV-1278863_16	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-1278863_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1278863_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1278863_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1278863_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1278863_18	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1278863_18	Structural annotation	PF06810	NA	NA
UHGV-1278863_19	PHROG	phrog_544	major head protein	head and packaging
UHGV-1278863_19	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1278863_19	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1278863_19	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1278863_20	UniRef90	UniRef90_A0A544UKK8	Rho_N domain-containing protein	NA
UHGV-1278863_22	PHROG	phrog_17977	NA	unknown function
UHGV-1278863_22	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1278863_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1278863_23	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-1278863_23	Structural annotation	PF11367	NA	NA
UHGV-1278863_24	PHROG	phrog_885	major tail protein	tail
UHGV-1278863_24	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1278863_24	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1278863_24	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1278863_27	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1278863_27	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-1278863_27	COG	COG1511	NA	NA
UHGV-1278863_28	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1278863_29	eggNOG-mapper	1232443.BAIA02000078_gene16	NA	NA
UHGV-1278863_29	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-1278863_30	PHROG	phrog_7121	tail fiber protein	tail
UHGV-1278863_30	UniRef90	UniRef90_A0A856HZ25	Tail fiber domain-containing protein	NA
UHGV-1278863_30	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-1278863_30	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1278863_30	Structural annotation	PF07902, NF041249	NA	NA
UHGV-1278863_32	PHROG	phrog_32779	NA	unknown function
UHGV-1278863_32	eggNOG-mapper	1235797.C816_04177	alginic acid biosynthetic process	NA
UHGV-1278863_32	COG	COG1511	NA	NA
UHGV-1278863_35	PHROG	phrog_10898	NA	unknown function
UHGV-1278863_35	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-1278863_35	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-1278863_35	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-1278863_35	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-1278863_36	Structural annotation	PF16408, NF033510	NA	NA
UHGV-1278863_37	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-1278863_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1278863_38	PHROG	phrog_3904	tail fiber protein	tail
UHGV-1278863_38	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-1278863_38	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1278863_38	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-1278863_42	PHROG	phrog_19111	NA	unknown function
UHGV-1278863_42	eggNOG-mapper	756499.Desde_3162	nuclear chromosome segregation	NA
UHGV-1278863_42	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1278863_43	eggNOG-mapper	1007096.BAGW01000017_gene815	NA	NA
UHGV-1278863_44	UniRef90	UniRef90_A0A1C6FDZ1	SLH domain-containing protein	NA
UHGV-1278863_44	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-1278863_44	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-1278863_44	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-1278863_44	Structural annotation	PF03412, COG4990	NA	NA
UHGV-1278863_45	PHROG	phrog_1863	NA	unknown function
UHGV-1278863_45	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-1278863_46	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-1278863_46	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-1278863_48	PHROG	phrog_3754	NA	unknown function
UHGV-1278863_48	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1278863_49	PHROG	phrog_21718	NA	unknown function
UHGV-1278863_49	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1278863_50	PHROG	phrog_22984	NA	unknown function
UHGV-1278863_51	PHROG	phrog_16490	NA	unknown function
UHGV-1278863_51	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1278863_52	PHROG	phrog_20016	NA	unknown function
UHGV-1278863_52	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-1278863_52	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1278863_52	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1278863_54	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1278863_55	KOfam	K14059	int; integrase	NA
UHGV-1278863_55	PHROG	phrog_1	integrase	integration and excision
UHGV-1278863_55	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-1278863_55	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-1278863_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1278863_55	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1278863_55	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1278863_56	eggNOG-mapper	1384066.JAGT01000001_gene1516	NA	NA
UHGV-1278863_56	Structural annotation	PF13560, TIGR03070, COG3655	NA	NA
UHGV-1278863_57	UniRef90	UniRef90_A0A212KHQ5	Cu_amine_oxidN1 domain-containing protein	NA
UHGV-1278863_57	eggNOG-mapper	1203606.HMPREF1526_00218	Copper amine oxidase N-terminal domain	NA
UHGV-1278863_57	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-1278863_57	COG	COG1555	DNA uptake protein ComE or related DNA-binding protein	NA
UHGV-1278863_60	PHROG	phrog_750	NA	unknown function
UHGV-1278863_60	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-1278863_60	Structural annotation	COG1321	NA	NA
UHGV-1278863_63	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-1278863_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1278863_64	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-1278863_64	Structural annotation	PF11112, COG3311	NA	NA