UHGV-1281453

Genome information

vOTU vOTU-019609

Genome length 32,594 bps

CDS count 57

Completeness 77.89% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-1281453
vOTU ID	vOTU-019609
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Han_2018_ERR1398234_NODE_390_length_32594_cov_28.712284
BioSample	SAMEA3951673
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.37
Jumbo phage	No

Genome content
Genome length	32,594 bps
GC content	54.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.13%
Average CDS length	529.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1281453_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1281453_1	PHROG	phrog_17284	NA	unknown function
UHGV-1281453_1	UniRef90	UniRef90_A0A1Q6RQI3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1281453_1	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1281453_1	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1281453_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1281453_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1281453_2	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1281453_2	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1281453_2	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-1281453_2	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1281453_2	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1281453_2	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1281453_2	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-1281453_3	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1281453_3	UniRef90	UniRef90_A0A8D9PDD1	DNA (Cytosine 5) methyltransferase	NA
UHGV-1281453_3	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-1281453_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1281453_3	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1281453_5	PHROG	phrog_27610	NA	unknown function
UHGV-1281453_6	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-1281453_6	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-1281453_7	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-1281453_8	PHROG	phrog_38832	NA	unknown function
UHGV-1281453_8	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-1281453_9	PHROG	phrog_3136	NA	unknown function
UHGV-1281453_9	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-1281453_9	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1281453_9	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1281453_9	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1281453_13	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1281453_13	UniRef90	UniRef90_UPI0005288167	NA	NA
UHGV-1281453_13	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-1281453_13	Pfam	PF06356	NA	DUF1064
UHGV-1281453_13	Structural annotation	PF06356	NA	NA
UHGV-1281453_16	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1281453_17	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-1281453_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1281453_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1281453_18	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-1281453_18	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1281453_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1281453_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1281453_18	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1281453_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1281453_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1281453_19	UniRef90	UniRef90_UPI001D05F697	terminase small subunit	NA
UHGV-1281453_19	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-1281453_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1281453_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1281453_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1281453_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1281453_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1281453_20	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1281453_20	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1281453_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1281453_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1281453_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1281453_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-1281453_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1281453_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-1281453_21	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-1281453_21	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1281453_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1281453_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1281453_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1281453_22	UniRef90	UniRef90_A0A2U1BEM4	Minor capsid protein 2	NA
UHGV-1281453_22	eggNOG-mapper	1232443.BAIA02000078_gene35	NA	NA
UHGV-1281453_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1281453_22	COG	COG2369	NA	NA
UHGV-1281453_22	Structural annotation	PF06152	NA	NA
UHGV-1281453_23	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1281453_23	UniRef90	UniRef90_UPI001D0ED280	AP2 domain-containing protein	NA
UHGV-1281453_23	eggNOG-mapper	756499.Desde_1078	NA	NA
UHGV-1281453_23	Structural annotation	PF00847, PF18115	NA	NA
UHGV-1281453_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1281453_24	UniRef90	UniRef90_A0A2Z4QAD7	Minor capsid protein 2	NA
UHGV-1281453_24	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1281453_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1281453_24	COG	COG2369	NA	NA
UHGV-1281453_25	PHROG	phrog_3896	NA	unknown function
UHGV-1281453_25	eggNOG-mapper	476272.RUMHYD_01985	NA	NA
UHGV-1281453_27	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1281453_27	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1281453_27	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-1281453_27	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-1281453_27	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1281453_27	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1281453_27	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1281453_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1281453_28	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-1281453_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-1281453_29	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-1281453_29	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1281453_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1281453_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1281453_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1281453_29	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1281453_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1281453_30	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1281453_31	PHROG	phrog_3366	NA	unknown function
UHGV-1281453_31	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1281453_31	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1281453_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1281453_32	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-1281453_32	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1281453_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1281453_32	Structural annotation	PF11114	NA	NA
UHGV-1281453_33	PHROG	phrog_3266	tail completion	connector
UHGV-1281453_33	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1281453_33	Structural annotation	PF12691	NA	NA
UHGV-1281453_34	PHROG	phrog_3099	NA	unknown function
UHGV-1281453_34	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-1281453_34	Structural annotation	TIGR02126	NA	NA
UHGV-1281453_35	PHROG	phrog_11299	NA	unknown function
UHGV-1281453_35	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1281453_35	Structural annotation	PF10666	NA	NA
UHGV-1281453_36	PHROG	phrog_706	NA	unknown function
UHGV-1281453_36	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1281453_36	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1281453_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1281453_36	Structural annotation	PF06854	NA	NA
UHGV-1281453_37	Structural annotation	PF02883, MF_00791, TIGR04209, COG2967	NA	NA
UHGV-1281453_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1281453_38	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-1281453_38	COG	COG1511	NA	NA
UHGV-1281453_38	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1281453_39	PHROG	phrog_1194	NA	unknown function
UHGV-1281453_39	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-1281453_39	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1281453_40	PHROG	phrog_32744	NA	unknown function
UHGV-1281453_40	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-1281453_40	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-1281453_41	UniRef90	UniRef90_A0A4D7AHL6	Collagen-like protein	NA
UHGV-1281453_41	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-1281453_41	Structural annotation	PF20623	NA	NA
UHGV-1281453_42	eggNOG-mapper	1226322.HMPREF1545_00128	NA	NA
UHGV-1281453_43	PHROG	phrog_134	NA	unknown function
UHGV-1281453_43	UniRef90	UniRef90_A0A356L0N0	XkdX family protein	NA
UHGV-1281453_43	eggNOG-mapper	1297617.JPJD01000099_gene2170	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1281453_43	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1281453_43	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1281453_45	PHROG	phrog_937	hemolysin	other
UHGV-1281453_45	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-1281453_46	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-1281453_46	Structural annotation	PF09992, COG4632	NA	NA
UHGV-1281453_47	PHROG	phrog_13256	NA	unknown function
UHGV-1281453_47	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-1281453_48	PHROG	phrog_21357	endolysin	lysis
UHGV-1281453_48	UniRef90	UniRef90_A0A329UV62	Peptidase C51 domain-containing protein	NA
UHGV-1281453_48	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-1281453_48	Pfam	PF05257	CHAP domain	CHAP
UHGV-1281453_48	COG	COG1388	LysM repeat	NA
UHGV-1281453_48	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-1281453_50	PHROG	phrog_3754	NA	unknown function
UHGV-1281453_50	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1281453_51	PHROG	phrog_21718	NA	unknown function
UHGV-1281453_51	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1281453_52	PHROG	phrog_22984	NA	unknown function
UHGV-1281453_53	PHROG	phrog_16490	NA	unknown function
UHGV-1281453_53	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1281453_55	PHROG	phrog_20016	NA	unknown function
UHGV-1281453_55	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1281453_55	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1281453_55	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1281453_56	PHROG	phrog_28802	NA	unknown function
UHGV-1281453_57	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA