UHGV-1287097

Genome information

Genome length 27,334 bps

CDS count 37

Completeness 60.93% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-1287097
vOTU ID	vOTU-018962
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Han_2018_ERR1398098_NODE_827_length_27334_cov_7.212031
BioSample	SAMEA3951678
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.27
Jumbo phage	No

Genome content
Genome length	27,334 bps
GC content	47.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	91.49%
Average CDS length	681.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1287097_1	PHROG	phrog_1419	tail protein	tail
UHGV-1287097_2	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-1287097_2	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-1287097_3	PHROG	phrog_5717	tail protein	tail
UHGV-1287097_3	Structural annotation	COG4675	NA	NA
UHGV-1287097_4	PHROG	phrog_521	tail protein	tail
UHGV-1287097_4	UniRef90	UniRef90_UPI000CF9808B	NA	NA
UHGV-1287097_4	eggNOG-mapper	1111454.HMPREF1250_0159	NA	NA
UHGV-1287097_4	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1287097_4	COG	COG3778	NA	NA
UHGV-1287097_5	PHROG	phrog_6	baseplate protein	tail
UHGV-1287097_5	UniRef90	UniRef90_UPI00190E9FD9	baseplate J/gp47 family protein	NA
UHGV-1287097_5	eggNOG-mapper	1111454.HMPREF1250_0160	Baseplate J-like protein	NA
UHGV-1287097_5	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1287097_5	COG	COG3299	NA	NA
UHGV-1287097_5	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1287097_6	PHROG	phrog_120	baseplate protein	tail
UHGV-1287097_6	UniRef90	UniRef90_UPI000F8DC559	NA	NA
UHGV-1287097_6	eggNOG-mapper	546273.VEIDISOL_00728	NA	NA
UHGV-1287097_6	Pfam	PF10934	NA	DUF2634
UHGV-1287097_6	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1287097_6	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1287097_7	PHROG	phrog_579	NA	unknown function
UHGV-1287097_7	UniRef90	UniRef90_UPI000CFA1C61	NA	NA
UHGV-1287097_7	eggNOG-mapper	546273.VEIDISOL_00727	NA	NA
UHGV-1287097_7	Pfam	PF10844	NA	DUF2577
UHGV-1287097_7	Structural annotation	PF10844, COG0186	NA	NA
UHGV-1287097_8	PHROG	phrog_400	tail protein	tail
UHGV-1287097_8	UniRef90	UniRef90_UPI000CF8ACDE	phage tail tip lysozyme	NA
UHGV-1287097_8	eggNOG-mapper	1111454.HMPREF1250_0162	PFAM Phage late control gene D protein (GPD)	NA
UHGV-1287097_8	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1287097_8	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1287097_8	Structural annotation	PF14594, PF18013, NF033848, COG4379	NA	NA
UHGV-1287097_9	PHROG	phrog_380	endolysin	lysis
UHGV-1287097_9	UniRef90	UniRef90_UPI000CFA067D	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1287097_9	eggNOG-mapper	546273.VEIDISOL_00725	PFAM LysM domain	NA
UHGV-1287097_9	Pfam	PF01476	LysM domain	LysM
UHGV-1287097_9	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1287097_10	PHROG	phrog_12798	NA	unknown function
UHGV-1287097_10	eggNOG-mapper	1042156.CXIVA_01700	tape measure	NA
UHGV-1287097_10	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1287097_11	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1287097_11	UniRef90	UniRef90_T3D7L0	Phage XkdN-like family protein	NA
UHGV-1287097_11	eggNOG-mapper	1151292.QEW_3490	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1287097_11	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1287097_11	Structural annotation	PF08890, COG4518	NA	NA
UHGV-1287097_12	PHROG	phrog_365	tail protein	tail
UHGV-1287097_12	UniRef90	UniRef90_UPI000CF89473	phage tail tube protein	NA
UHGV-1287097_12	eggNOG-mapper	1123511.KB905868_gene174	Phage tail tube protein	NA
UHGV-1287097_12	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1287097_12	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1287097_13	PHROG	phrog_279	tail sheath	tail
UHGV-1287097_13	UniRef90	UniRef90_UPI000CF9E28F	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-1287097_13	eggNOG-mapper	696281.Desru_1315	PFAM Phage tail sheath protein	NA
UHGV-1287097_13	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-1287097_13	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1287097_13	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1287097_13	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1287097_14	PHROG	phrog_966	NA	unknown function
UHGV-1287097_15	PHROG	phrog_525	NA	unknown function
UHGV-1287097_15	eggNOG-mapper	768710.DesyoDRAFT_5212	NA	NA
UHGV-1287097_15	Pfam	PF20765	NA	DUF6838
UHGV-1287097_15	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1287097_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1287097_16	UniRef90	UniRef90_UPI000CF889F3	HK97 gp10 family phage protein	NA
UHGV-1287097_16	eggNOG-mapper	862517.HMPREF9225_1644	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1287097_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1287097_16	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1287097_17	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1287097_17	eggNOG-mapper	1042156.CXIVA_01780	NA	NA
UHGV-1287097_17	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1287097_18	eggNOG-mapper	1111454.HMPREF1250_0173	NA	NA
UHGV-1287097_18	Structural annotation	PF05135	NA	NA
UHGV-1287097_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-1287097_19	UniRef90	UniRef90_R5SNJ0	Lj928 prophage protein	NA
UHGV-1287097_19	eggNOG-mapper	888060.HMPREF9081_1550	NA	NA
UHGV-1287097_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1287097_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1287097_20	UniRef90	UniRef90_UPI000CF9B553	phage scaffolding protein	NA
UHGV-1287097_20	eggNOG-mapper	1408823.AXUS01000024_gene2715	Phage minor structural protein GP20	NA
UHGV-1287097_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1287097_20	Structural annotation	PF06810	NA	NA
UHGV-1287097_22	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1287097_22	UniRef90	UniRef90_UPI000CF99D93	minor capsid protein	NA
UHGV-1287097_22	eggNOG-mapper	1111454.HMPREF1250_0178	Phage Mu protein F like protein	NA
UHGV-1287097_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1287097_22	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1287097_22	COG	COG2369	NA	NA
UHGV-1287097_22	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1287097_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-1287097_23	UniRef90	UniRef90_UPI00135B39E5	phage portal protein	NA
UHGV-1287097_23	eggNOG-mapper	1203606.HMPREF1526_00321	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1287097_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1287097_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1287097_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1287097_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1287097_24	UniRef90	UniRef90_A0A1M6P1A0	Phage terminase, large subunit, PBSX family	NA
UHGV-1287097_24	eggNOG-mapper	1232428.CAVO010000021_gene807	Phage terminase large subunit	NA
UHGV-1287097_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1287097_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1287097_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1287097_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1287097_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1287097_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1287097_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1287097_25	UniRef90	UniRef90_A0A413QU90	Terminase small subunit	NA
UHGV-1287097_25	eggNOG-mapper	1000569.HMPREF1040_0201	terminase, small subunit	NA
UHGV-1287097_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1287097_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1287097_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1287097_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1287097_26	UniRef90	UniRef90_U7ULD4	PF07374 family protein	NA
UHGV-1287097_26	eggNOG-mapper	1111454.HMPREF1250_1040	NA	NA
UHGV-1287097_26	Pfam	PF07374	NA	DUF1492
UHGV-1287097_26	Structural annotation	PF07374, TIGR02984, COG2739	NA	NA
UHGV-1287097_27	PHROG	phrog_4074	NA	unknown function
UHGV-1287097_27	eggNOG-mapper	1232428.CAVO010000003_gene1016	NA	NA
UHGV-1287097_27	Structural annotation	TIGR04550	NA	NA
UHGV-1287097_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1287097_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1287097_28	UniRef90	UniRef90_A0A848ESG3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1287097_28	eggNOG-mapper	706434.HMPREF9429_00539	crossover junction endodeoxyribonuclease RusA	NA
UHGV-1287097_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1287097_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1287097_29	PHROG	phrog_98	NA	unknown function
UHGV-1287097_29	UniRef90	UniRef90_A0A0J6WTJ8	YopX domain-containing protein	NA
UHGV-1287097_29	eggNOG-mapper	431943.CKL_1904	YopX protein	NA
UHGV-1287097_29	Pfam	PF09643	YopX protein	YopX
UHGV-1287097_29	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1287097_29	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1287097_32	UniRef90	UniRef90_UPI0008392BD5	NA	NA
UHGV-1287097_34	PHROG	phrog_9804	NA	unknown function
UHGV-1287097_34	UniRef90	UniRef90_A0A1C5TFI8	Inhibitor_G39P domain-containing protein	NA
UHGV-1287097_34	eggNOG-mapper	1273103.NM10_01154	NA	NA
UHGV-1287097_34	Structural annotation	PF11417	NA	NA
UHGV-1287097_35	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1287097_35	UniRef90	UniRef90_UPI000943C55F	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-1287097_35	eggNOG-mapper	1273103.NM10_01159	Replication initiation and membrane attachment	NA
UHGV-1287097_35	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1287097_35	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1287097_35	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1287097_35	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-1287097_36	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1287097_36	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1287097_36	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-1287097_36	eggNOG-mapper	1196028.ALEF01000043_gene487	RecT family	NA
UHGV-1287097_36	Pfam	PF03837	RecT family	RecT
UHGV-1287097_36	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1287097_36	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1287097_36	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1287097_37	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1287097_37	UniRef90	UniRef90_U7UMV1	YqaJ-like viral recombinase domain protein	NA
UHGV-1287097_37	eggNOG-mapper	1111454.HMPREF1250_0282	YqaJ viral recombinase family protein	NA
UHGV-1287097_37	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1287097_37	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1287097_37	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1287097_37	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA