UHGV-1301888

Genome information

Genome length 42,432 bps

CDS count 56

Completeness 99.42% (high-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-1301888
vOTU ID	vOTU-012378
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Han_2018_ERR1398212_NODE_438_length_42432_cov_14.332185
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.72
Jumbo phage	No

Genome content
Genome length	42,432 bps
GC content	55.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.81%
Average CDS length	714.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1301888_1	PHROG	phrog_37900	NA	unknown function
UHGV-1301888_1	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1301888_2	PHROG	phrog_29409	NA	unknown function
UHGV-1301888_2	UniRef90	UniRef90_UPI001A9AA1DC	isoaspartyl peptidase	NA
UHGV-1301888_4	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-1301888_4	PHROG	phrog_30034	NA	unknown function
UHGV-1301888_4	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-1301888_4	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-1301888_4	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1301888_4	Structural annotation	PF14600	NA	NA
UHGV-1301888_5	PHROG	phrog_937	hemolysin	other
UHGV-1301888_5	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-1301888_6	PHROG	phrog_1899	NA	unknown function
UHGV-1301888_6	UniRef90	UniRef90_A0A3D1LBG0	Gp58 domain-containing protein	NA
UHGV-1301888_6	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-1301888_6	Pfam	PF07902	gp58-like protein	Gp58
UHGV-1301888_6	Structural annotation	NF038340	NA	NA
UHGV-1301888_7	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1301888_7	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-1301888_7	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1301888_8	eggNOG-mapper	1226322.HMPREF1545_00786	NA	NA
UHGV-1301888_9	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1301888_9	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-1301888_9	UniRef90	UniRef90_A0A3D1LAM6	Helicase ATP-binding domain-containing protein (Fragment)	NA
UHGV-1301888_9	eggNOG-mapper	1235797.C816_04246	SNF2 family N-terminal domain	NA
UHGV-1301888_9	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1301888_9	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1301888_9	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-1301888_11	PHROG	phrog_6918	holin	lysis
UHGV-1301888_11	UniRef90	UniRef90_G9YP36	Phage holin, LL-H family	NA
UHGV-1301888_11	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1301888_11	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1301888_11	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1301888_12	PHROG	phrog_774	NA	unknown function
UHGV-1301888_12	UniRef90	UniRef90_A0A380IMM1	NA	NA
UHGV-1301888_12	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1301888_13	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1301888_13	PHROG	phrog_670	endolysin	lysis
UHGV-1301888_13	UniRef90	UniRef90_A0A1V5KCB7	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1301888_13	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-1301888_13	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1301888_13	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1301888_13	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1301888_14	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-1301888_14	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-1301888_17	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1301888_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1301888_20	UniRef90	UniRef90_UPI000C7BE75B	helix-turn-helix transcriptional regulator	NA
UHGV-1301888_20	eggNOG-mapper	1408437.JNJN01000082_gene261	Helix-turn-helix domain	NA
UHGV-1301888_20	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1301888_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1301888_21	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-1301888_24	PHROG	phrog_4973	NA	unknown function
UHGV-1301888_24	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-1301888_24	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-1301888_24	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1301888_24	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-1301888_26	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1301888_26	UniRef90	UniRef90_UPI00130EB09C	ERF family protein	NA
UHGV-1301888_26	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-1301888_26	Pfam	PF04404	ERF superfamily	ERF
UHGV-1301888_26	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1301888_27	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1301888_27	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-1301888_27	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1301888_27	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1301888_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1301888_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1301888_29	UniRef90	UniRef90_R6LLA3	Single-stranded DNA-binding protein	NA
UHGV-1301888_29	eggNOG-mapper	1007096.BAGW01000033_gene1610	Single-strand binding protein family	NA
UHGV-1301888_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1301888_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1301888_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1301888_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1301888_29	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1301888_30	PHROG	phrog_16304	NA	unknown function
UHGV-1301888_30	UniRef90	UniRef90_UPI001C10203E	NA	NA
UHGV-1301888_30	eggNOG-mapper	1007096.BAGW01000033_gene1617	ROK family	NA
UHGV-1301888_30	Pfam	PF19808	NA	DUF6291
UHGV-1301888_30	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-1301888_30	Structural annotation	PF19808	NA	NA
UHGV-1301888_31	eggNOG-mapper	1444310.JANV01000162_gene1216	NA	NA
UHGV-1301888_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1301888_33	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-1301888_33	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-1301888_33	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1301888_35	Pfam	PF04448	NA	DUF551
UHGV-1301888_35	Structural annotation	NF041588	NA	NA
UHGV-1301888_37	PHROG	phrog_38832	NA	unknown function
UHGV-1301888_37	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-1301888_37	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-1301888_40	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1301888_40	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1301888_42	PHROG	phrog_22543	NA	unknown function
UHGV-1301888_42	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-1301888_48	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1301888_48	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-1301888_48	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1301888_48	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1301888_48	Structural annotation	PF16677	NA	NA
UHGV-1301888_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1301888_49	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1301888_49	UniRef90	UniRef90_A0A3D1LE76	Terminase-like family protein	NA
UHGV-1301888_49	eggNOG-mapper	657322.FPR_02290	Terminase-like family	NA
UHGV-1301888_49	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1301888_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-1301888_49	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1301888_50	PHROG	phrog_156	portal protein	head and packaging
UHGV-1301888_50	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-1301888_50	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-1301888_50	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1301888_51	PHROG	phrog_4478	peptidase	other
UHGV-1301888_51	UniRef90	UniRef90_UPI001D021C93	ribosomal-processing cysteine protease Prp	NA
UHGV-1301888_51	COG	COG2868	NA	NA
UHGV-1301888_51	Structural annotation	NF011128, COG2868	NA	NA
UHGV-1301888_52	PHROG	phrog_13908	NA	unknown function
UHGV-1301888_52	eggNOG-mapper	1203606.HMPREF1526_02747	NA	NA
UHGV-1301888_53	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1301888_53	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-1301888_53	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-1301888_53	Pfam	PF13252	NA	DUF4043
UHGV-1301888_53	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1301888_53	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1301888_54	PHROG	phrog_15239	NA	unknown function
UHGV-1301888_54	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-1301888_55	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1301888_55	PHROG	phrog_819	tail protein	tail
UHGV-1301888_55	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-1301888_55	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1301888_55	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1301888_56	PHROG	phrog_37900	NA	unknown function
UHGV-1301888_56	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-1301888_56	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-1301888_56	COG	COG3827	Cell pole-organizing protein PopZ	NA