UHGV-1303826

Genome information

Genome length 27,471 bps

CDS count 48

Completeness 70.04% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-1303826
vOTU ID	vOTU-033415
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Lim_Twin_A2_NODE_6_length_27471_cov_11.462039
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.79
Jumbo phage	No

Genome content
Genome length	27,471 bps
GC content	34.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.38%
Average CDS length	531.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1303826_1	eggNOG-mapper	469617.FUAG_00837	Phage capsid family	NA
UHGV-1303826_1	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1303826_2	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1303826_2	UniRef90	UniRef90_UPI001897779E	head-tail connector protein	NA
UHGV-1303826_2	eggNOG-mapper	195103.CPF_1583	Phage gp6-like head-tail connector protein	NA
UHGV-1303826_2	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1303826_2	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1303826_2	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1303826_3	PHROG	phrog_25	head closure Hc1	connector
UHGV-1303826_3	UniRef90	UniRef90_A0A1M4ZEC7	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-1303826_3	eggNOG-mapper	155515.JP36_07460	Phage head-tail joining protein	NA
UHGV-1303826_3	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1303826_3	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1303826_3	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1303826_3	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1303826_4	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1303826_4	UniRef90	UniRef90_A0A1M4ZE79	Phage protein, HK97 gp10 family	NA
UHGV-1303826_4	eggNOG-mapper	324057.Pjdr2_1547	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1303826_4	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1303826_4	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1303826_4	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-1303826_5	PHROG	phrog_347	tail terminator	connector
UHGV-1303826_5	UniRef90	UniRef90_UPI001C59BF42	NA	NA
UHGV-1303826_5	eggNOG-mapper	1536773.R70331_25695	NA	NA
UHGV-1303826_5	Structural annotation	PF11367	NA	NA
UHGV-1303826_6	PHROG	phrog_158	major tail protein	tail
UHGV-1303826_6	UniRef90	UniRef90_A0A1C6JNH2	Predicted secreted protein	NA
UHGV-1303826_6	eggNOG-mapper	1414720.CBYM010000002_gene566	Phage tail tube protein	NA
UHGV-1303826_6	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-1303826_6	Structural annotation	PF16461, TIGR02241, COG5437	NA	NA
UHGV-1303826_7	PHROG	phrog_2115	tail protein	tail
UHGV-1303826_7	UniRef90	UniRef90_A0A533S6D3	Gene transfer agent family protein	NA
UHGV-1303826_7	eggNOG-mapper	1414720.CBYM010000002_gene564	NA	NA
UHGV-1303826_7	Structural annotation	PF19591	NA	NA
UHGV-1303826_8	PHROG	phrog_19318	NA	unknown function
UHGV-1303826_8	eggNOG-mapper	1122919.KB905559_gene1348	NA	NA
UHGV-1303826_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1303826_9	UniRef90	UniRef90_A0A1C6JZ05	Phage-related protein	NA
UHGV-1303826_9	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-1303826_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1303826_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1303826_11	PHROG	phrog_1194	NA	unknown function
UHGV-1303826_11	eggNOG-mapper	645991.Sgly_0353	NA	NA
UHGV-1303826_11	Pfam	PF20458	NA	DUF6711
UHGV-1303826_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1303826_13	PHROG	phrog_6616	tail protein	tail
UHGV-1303826_13	eggNOG-mapper	1158614.I592_02258	Prophage endopeptidase tail	NA
UHGV-1303826_13	COG	COG4926	Phage-related protein	NA
UHGV-1303826_16	UniRef90	UniRef90_UPI0006B5D213	BppU family phage baseplate upper protein	NA
UHGV-1303826_18	Pfam	PF20787	SPP1 phage GP23.1	SPP1_GP23-1
UHGV-1303826_19	PHROG	phrog_1863	NA	unknown function
UHGV-1303826_19	eggNOG-mapper	1033740.CAEW01000026_gene549	NA	NA
UHGV-1303826_21	eggNOG-mapper	642492.Clole_0840	NA	NA
UHGV-1303826_22	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1303826_22	PHROG	phrog_9611	endolysin	lysis
UHGV-1303826_22	UniRef90	UniRef90_F2JQ26	N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD	NA
UHGV-1303826_22	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1303826_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1303826_22	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1303826_23	PHROG	phrog_8487	NA	unknown function
UHGV-1303826_23	eggNOG-mapper	1034347.CAHJ01000080_gene1213	Streptococcus thermophilus bacteriophage Gp111 protein	NA
UHGV-1303826_23	Pfam	PF07410	Streptococcus thermophilus bacteriophage Gp111 protein	Phage_Gp111
UHGV-1303826_25	PHROG	phrog_27252	NA	unknown function
UHGV-1303826_25	UniRef90	UniRef90_A0A1U7M7K4	HTH_59 domain-containing protein	NA
UHGV-1303826_25	eggNOG-mapper	1151292.QEW_4392	NA	NA
UHGV-1303826_25	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-1303826_26	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1303826_26	UniRef90	UniRef90_A0A1Y4B6X9	AP2/ERF domain-containing protein	NA
UHGV-1303826_26	eggNOG-mapper	903814.ELI_3180	NA	NA
UHGV-1303826_26	Structural annotation	PF18337, PF00847	NA	NA
UHGV-1303826_28	PHROG	phrog_12151	NA	unknown function
UHGV-1303826_29	KOfam	K14059	int; integrase	NA
UHGV-1303826_29	PHROG	phrog_1	integrase	integration and excision
UHGV-1303826_29	UniRef90	UniRef90_F2JNV0	Integrase family protein	NA
UHGV-1303826_29	eggNOG-mapper	642492.Clole_0715	Belongs to the 'phage' integrase family	NA
UHGV-1303826_29	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1303826_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1303826_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1303826_29	Structural annotation	PF00589, PF14659, PF12286, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-1303826_30	PHROG	phrog_87	metallo-protease	other
UHGV-1303826_30	UniRef90	UniRef90_A0A420VI29	Putative Zn peptidase	NA
UHGV-1303826_30	eggNOG-mapper	1089548.KI783301_gene2642	Zn peptidase	NA
UHGV-1303826_30	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1303826_30	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1303826_30	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1303826_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1303826_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1303826_31	UniRef90	UniRef90_F2JQR5	Helix-turn-helix domain protein	NA
UHGV-1303826_31	eggNOG-mapper	642492.Clole_0928	addiction module antidote protein HigA	NA
UHGV-1303826_31	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1303826_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1303826_32	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1303826_32	UniRef90	UniRef90_A0A5C0SEH3	Bro-N domain-containing protein	NA
UHGV-1303826_32	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-1303826_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1303826_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1303826_32	COG	COG3617	Prophage antirepressor	NA
UHGV-1303826_32	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1303826_33	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-1303826_33	UniRef90	UniRef90_F2JQR6	Helix-turn-helix domain protein	NA
UHGV-1303826_33	eggNOG-mapper	642492.Clole_0929	Helix-turn-helix	NA
UHGV-1303826_33	Structural annotation	PF01381, NF010465, COG3655	NA	NA
UHGV-1303826_34	UniRef90	UniRef90_F2JNV5	HTH_17 domain-containing protein	NA
UHGV-1303826_34	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1303826_34	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1303826_35	eggNOG-mapper	697281.Mahau_2928	NA	NA
UHGV-1303826_42	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1303826_42	UniRef90	UniRef90_F2JQT0	ERCC4 domain protein	NA
UHGV-1303826_42	eggNOG-mapper	642492.Clole_0943	ERCC4 domain	NA
UHGV-1303826_42	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1303826_42	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-1303826_43	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1303826_43	UniRef90	UniRef90_A0A3B8SWQ8	Single-stranded DNA-binding protein	NA
UHGV-1303826_43	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-1303826_43	Pfam	PF04404	ERF superfamily	ERF
UHGV-1303826_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1303826_43	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1303826_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1303826_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1303826_44	UniRef90	UniRef90_F2JQT2	Single-stranded DNA-binding protein	NA
UHGV-1303826_44	eggNOG-mapper	642492.Clole_0945	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1303826_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1303826_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1303826_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1303826_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1303826_44	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1303826_45	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1303826_45	UniRef90	UniRef90_F2JQT3	Phage regulatory protein	NA
UHGV-1303826_45	eggNOG-mapper	642492.Clole_0946	DnaD domain protein	NA
UHGV-1303826_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1303826_45	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-1303826_46	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-1303826_46	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1303826_46	UniRef90	UniRef90_F2JQT4	DnaB domain protein helicase domain protein	NA
UHGV-1303826_46	eggNOG-mapper	642492.Clole_0947	NA	NA
UHGV-1303826_46	Pfam	PF13481	AAA domain	AAA_25
UHGV-1303826_46	COG	COG0305	Replicative DNA helicase	NA
UHGV-1303826_46	Structural annotation	PF03796, PF19898, MF_04154, NF006458, TIGR01391, COG0305	NA	NA
UHGV-1303826_48	PHROG	phrog_236	nucleotide kinase	other
UHGV-1303826_48	UniRef90	UniRef90_A0A5B9YJ16	NA	NA
UHGV-1303826_48	eggNOG-mapper	1111454.HMPREF1250_1038	NA	NA
UHGV-1303826_48	Pfam	PF11753	NA	DUF3310