UHGV-1308353

Genome information

vOTU vOTU-020827

Genome length 42,212 bps

CDS count 73

Completeness 63.27% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-1308353
vOTU ID	vOTU-020827
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Han_2018_ERR1398094_NODE_92_length_42212_cov_69.629955
BioSample	SAMEA3951696
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.43
Jumbo phage	No

Genome content
Genome length	42,212 bps
GC content	40.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	88.11%
Average CDS length	512.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1308353_1	eggNOG-mapper	411477.PARMER_02101	NA	NA
UHGV-1308353_3	UniRef90	UniRef90_UPI000E54150D	helix-turn-helix domain-containing protein	NA
UHGV-1308353_3	eggNOG-mapper	742727.HMPREF9447_04898	Helix-turn-helix domain	NA
UHGV-1308353_3	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1308353_3	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1308353_3	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1308353_4	eggNOG-mapper	1268240.ATFI01000007_gene444	NA	NA
UHGV-1308353_5	PHROG	phrog_4074	NA	unknown function
UHGV-1308353_5	UniRef90	UniRef90_V7HYF3	Putative bacteriophage protein	NA
UHGV-1308353_5	eggNOG-mapper	742767.HMPREF9456_02400	NA	NA
UHGV-1308353_6	KOfam	K05840	DRD5; dopamine receptor D5	NA
UHGV-1308353_6	PHROG	phrog_15773	NA	unknown function
UHGV-1308353_8	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1308353_8	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1308353_8	UniRef90	UniRef90_A0A414Q837	Recombinase RecT	NA
UHGV-1308353_8	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-1308353_8	Pfam	PF03837	RecT family	RecT
UHGV-1308353_8	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1308353_8	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1308353_8	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1308353_9	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-1308353_9	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1308353_9	UniRef90	UniRef90_A0A414Q850	YqaJ domain-containing protein	NA
UHGV-1308353_9	eggNOG-mapper	1121100.JCM6294_520	YqaJ-like viral recombinase domain	NA
UHGV-1308353_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1308353_9	Structural annotation	TIGR03033, COG5377	NA	NA
UHGV-1308353_10	PHROG	phrog_36980	NA	unknown function
UHGV-1308353_10	eggNOG-mapper	1268240.ATFI01000008_gene2556	NA	NA
UHGV-1308353_12	PHROG	phrog_19572	NA	unknown function
UHGV-1308353_12	UniRef90	UniRef90_UPI000E46A408	NA	NA
UHGV-1308353_12	eggNOG-mapper	1227276.HMPREF9148_02498	COG NOG14445 non supervised orthologous group	NA
UHGV-1308353_12	Pfam	PF14902	NA	DUF4494
UHGV-1308353_12	Structural annotation	PF14902, COG2157	NA	NA
UHGV-1308353_13	AcrCatalog	cluster_25385	NA	NA
UHGV-1308353_15	eggNOG-mapper	411901.BACCAC_02347	NA	NA
UHGV-1308353_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1308353_16	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1308353_16	UniRef90	UniRef90_UPI0018A01643	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1308353_16	eggNOG-mapper	435590.BVU_2854	Endodeoxyribonuclease RusA	NA
UHGV-1308353_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1308353_16	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1308353_17	UniRef90	UniRef90_UPI001C378A79	antA/AntB antirepressor family protein	NA
UHGV-1308353_17	eggNOG-mapper	1235803.C825_02646	BRO family, N-terminal domain	NA
UHGV-1308353_17	COG	COG3617	Prophage antirepressor	NA
UHGV-1308353_17	Structural annotation	PF08346, COG3561	NA	NA
UHGV-1308353_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1308353_18	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1308353_18	UniRef90	UniRef90_UPI0018981759	phage antirepressor KilAC domain-containing protein	NA
UHGV-1308353_18	eggNOG-mapper	1127696.HMPREF9134_00474	Phage antirepressor protein KilAC domain	NA
UHGV-1308353_18	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-1308353_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1308353_18	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1308353_18	Structural annotation	PF03374, COG3645	NA	NA
UHGV-1308353_19	PHROG	phrog_35728	NA	unknown function
UHGV-1308353_19	eggNOG-mapper	585502.HMPREF0645_2611	NA	NA
UHGV-1308353_20	PHROG	phrog_19578	NA	unknown function
UHGV-1308353_20	eggNOG-mapper	1268240.ATFI01000007_gene437	NA	NA
UHGV-1308353_20	Structural annotation	PF09827, MF_01471	NA	NA
UHGV-1308353_23	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1308353_23	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1308353_23	UniRef90	UniRef90_UPI001E2B78BF	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1308353_23	eggNOG-mapper	1121098.HMPREF1534_01082	C-5 cytosine-specific DNA methylase	NA
UHGV-1308353_23	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1308353_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1308353_23	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1308353_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1308353_23	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1308353_24	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1308353_24	UniRef90	UniRef90_UPI001C37881F	NUMOD4 domain-containing protein	NA
UHGV-1308353_24	eggNOG-mapper	679190.HMPREF0650_0103	NUMOD4 motif	NA
UHGV-1308353_24	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1308353_24	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1308353_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1308353_24	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1308353_25	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1308353_25	UniRef90	UniRef90_UPI001C37C50E	class I SAM-dependent methyltransferase	NA
UHGV-1308353_25	eggNOG-mapper	1121100.JCM6294_542	Methyltransferase domain	NA
UHGV-1308353_25	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1308353_25	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1308353_25	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-1308353_25	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1308353_26	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1308353_26	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1308353_26	UniRef90	UniRef90_UPI001C378DEE	DNA adenine methylase	NA
UHGV-1308353_26	eggNOG-mapper	641526.ADIWIN_2664	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1308353_26	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-1308353_26	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1308353_26	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-1308353_27	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1308353_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1308353_27	UniRef90	UniRef90_A0A174WLF0	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1308353_27	eggNOG-mapper	357276.EL88_11445	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1308353_27	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1308353_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1308353_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1308353_27	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-1308353_29	Structural annotation	PF20020	NA	NA
UHGV-1308353_32	PHROG	phrog_28300	NA	unknown function
UHGV-1308353_33	PHROG	phrog_12005	NA	unknown function
UHGV-1308353_36	PHROG	phrog_22725	NA	unknown function
UHGV-1308353_36	eggNOG-mapper	476272.RUMHYD_03319	NA	NA
UHGV-1308353_38	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-1308353_39	PHROG	phrog_874	NA	unknown function
UHGV-1308353_39	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-1308353_39	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1308353_40	PHROG	phrog_98	NA	unknown function
UHGV-1308353_40	UniRef90	UniRef90_UPI000E57ECE2	YopX family protein	NA
UHGV-1308353_40	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-1308353_40	Pfam	PF09643	YopX protein	YopX
UHGV-1308353_40	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1308353_40	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1308353_42	UniRef90	UniRef90_H2A0H1	Putative nuclease	NA
UHGV-1308353_42	eggNOG-mapper	213774.R9R2E1_9CAUD	HNH endonuclease	NA
UHGV-1308353_42	Structural annotation	TIGR01453	NA	NA
UHGV-1308353_43	Structural annotation	PF08928	NA	NA
UHGV-1308353_45	Structural annotation	PF02699, MF_01354, NF005100, COG5475	NA	NA
UHGV-1308353_46	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-1308353_46	Structural annotation	PF13384, TIGR04381	NA	NA
UHGV-1308353_47	Structural annotation	PF11169	NA	NA
UHGV-1308353_48	UniRef90	UniRef90_UPI0018A04156	phage antirepressor KilAC domain-containing protein	NA
UHGV-1308353_48	eggNOG-mapper	411901.BACCAC_01209	BRO family, N-terminal domain	NA
UHGV-1308353_48	COG	COG3617	Prophage antirepressor	NA
UHGV-1308353_48	Structural annotation	PF08346, COG3561	NA	NA
UHGV-1308353_50	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-1308353_50	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-1308353_51	PHROG	phrog_38431	NA	unknown function
UHGV-1308353_51	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-1308353_51	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-1308353_52	PHROG	phrog_34053	NA	unknown function
UHGV-1308353_53	PHROG	phrog_28898	NA	unknown function
UHGV-1308353_53	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-1308353_53	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-1308353_53	Structural annotation	PF10781	NA	NA
UHGV-1308353_54	PHROG	phrog_31654	NA	unknown function
UHGV-1308353_54	eggNOG-mapper	762968.HMPREF9441_00554	NA	NA
UHGV-1308353_55	PHROG	phrog_16490	NA	unknown function
UHGV-1308353_55	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-1308353_55	eggNOG-mapper	762968.HMPREF9441_00555	NA	NA
UHGV-1308353_56	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-1308353_56	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-1308353_56	Structural annotation	PF08299, NF004688	NA	NA
UHGV-1308353_59	PHROG	phrog_20787	virion structural protein	head and packaging
UHGV-1308353_59	eggNOG-mapper	449673.BACSTE_02041	Leucine-rich repeat (LRR) protein	NA
UHGV-1308353_59	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1308353_61	Structural annotation	PF14607, MF_01372, NF038393	NA	NA
UHGV-1308353_62	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1308353_62	PHROG	phrog_435	endolysin	lysis
UHGV-1308353_62	UniRef90	UniRef90_UPI0018997145	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1308353_62	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-1308353_62	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1308353_62	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1308353_62	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-1308353_64	PHROG	phrog_19698	NA	unknown function
UHGV-1308353_64	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-1308353_65	eggNOG-mapper	272559.BF9343_2359	NA	NA
UHGV-1308353_68	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-1308353_69	PHROG	phrog_38044	NA	unknown function
UHGV-1308353_69	UniRef90	UniRef90_E2N857	Phage major tail protein, phi13 family	NA
UHGV-1308353_69	eggNOG-mapper	1121100.JCM6294_565	Phage minor structural protein	NA
UHGV-1308353_69	COG	COG4926	Phage-related protein	NA
UHGV-1308353_69	Structural annotation	PF14594, PF04862, PF18141, TIGR01665, NF038128, COG4926	NA	NA
UHGV-1308353_70	eggNOG-mapper	742727.HMPREF9447_04845	NA	NA
UHGV-1308353_70	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1308353_72	Structural annotation	PF09202, MF_01819, NF038251, COG1846	NA	NA
UHGV-1308353_73	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1308353_73	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1308353_73	UniRef90	UniRef90_B0NM69	Phage regulatory protein, Rha family	NA
UHGV-1308353_73	eggNOG-mapper	449673.BACSTE_00571	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1308353_73	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1308353_73	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1308353_73	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1308353_73	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1308353_73	Structural annotation	PF09669, PF03374, TIGR02681, COG3645, COG3617	NA	NA