UHGV-1313100

Genome information

Genome length 58,127 bps

CDS count 52

Completeness 78.42% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-1313100
vOTU ID	vOTU-033494
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Chehoud_patient_2_NODE_3_length_58127_cov_394.798836
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.04
Jumbo phage	No

Genome content
Genome length	58,127 bps
GC content	43.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.96%
Average CDS length	1,031.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1313100_3	PHROG	phrog_14770	NA	unknown function
UHGV-1313100_3	UniRef90	UniRef90_UPI001C395052	strawberry notch C-terminal domain-containing protein	NA
UHGV-1313100_3	eggNOG-mapper	1121098.HMPREF1534_01128	CRISPR-associated helicase, Cas3	NA
UHGV-1313100_3	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-1313100_3	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-1313100_3	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-1313100_3	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1313100_3	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1313100_4	PHROG	phrog_16490	NA	unknown function
UHGV-1313100_4	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-1313100_4	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-1313100_5	PHROG	phrog_31654	NA	unknown function
UHGV-1313100_5	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-1313100_6	PHROG	phrog_28898	NA	unknown function
UHGV-1313100_6	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-1313100_6	Structural annotation	PF10781	NA	NA
UHGV-1313100_8	PHROG	phrog_38431	NA	unknown function
UHGV-1313100_8	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-1313100_8	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-1313100_9	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-1313100_10	COG	COG4926	Phage-related protein	NA
UHGV-1313100_11	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1313100_11	Structural annotation	PF14488, MF_01951, NF007538, COG3867	NA	NA
UHGV-1313100_13	Structural annotation	PF17994	NA	NA
UHGV-1313100_14	PHROG	phrog_22135	NA	unknown function
UHGV-1313100_14	Structural annotation	PF17212	NA	NA
UHGV-1313100_16	PHROG	phrog_26635	NA	unknown function
UHGV-1313100_16	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1313100_17	PHROG	phrog_22323	NA	unknown function
UHGV-1313100_17	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-1313100_18	PHROG	phrog_156	portal protein	head and packaging
UHGV-1313100_18	eggNOG-mapper	563031.HMPREF0666_01151	NA	NA
UHGV-1313100_18	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1313100_20	Structural annotation	PF02368	NA	NA
UHGV-1313100_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1313100_23	UniRef90	UniRef90_UPI00192482D4	terminase	NA
UHGV-1313100_23	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-1313100_23	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1313100_23	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1313100_24	PHROG	phrog_32516	NA	unknown function
UHGV-1313100_24	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-1313100_24	Structural annotation	PF11134, COG2706	NA	NA
UHGV-1313100_25	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1313100_25	UniRef90	UniRef90_UPI001C3801D7	NUMOD4 domain-containing protein	NA
UHGV-1313100_25	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-1313100_25	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1313100_25	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1313100_25	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1313100_25	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1313100_26	PHROG	phrog_27246	NA	unknown function
UHGV-1313100_28	PHROG	phrog_20732	NA	unknown function
UHGV-1313100_28	UniRef90	UniRef90_UPI000C787A6F	phage holin family protein	NA
UHGV-1313100_28	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-1313100_28	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1313100_29	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1313100_29	PHROG	phrog_822	amidase	lysis
UHGV-1313100_29	UniRef90	UniRef90_K1SWX0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1313100_29	eggNOG-mapper	1127696.HMPREF9134_00800	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1313100_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1313100_29	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1313100_29	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1313100_30	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-1313100_31	UniRef90	UniRef90_A0A3E5E9F8	DNA-binding protein	NA
UHGV-1313100_31	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-1313100_32	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1313100_32	UniRef90	UniRef90_A0A3E5E9I6	Class I SAM-dependent methyltransferase	NA
UHGV-1313100_32	eggNOG-mapper	1121098.HMPREF1534_01090	Methyltransferase domain	NA
UHGV-1313100_32	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1313100_32	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-1313100_32	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1313100_35	UniRef90	UniRef90_A0A374TCN1	Fructan hydrolase	NA
UHGV-1313100_35	eggNOG-mapper	483215.BACFIN_05621	NA	NA
UHGV-1313100_38	PHROG	phrog_24381	NA	unknown function
UHGV-1313100_40	Structural annotation	PF20338	NA	NA
UHGV-1313100_41	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1313100_41	eggNOG-mapper	629265.PMA4326_09935	NA	NA
UHGV-1313100_41	COG	COG3756	NA	NA
UHGV-1313100_42	eggNOG-mapper	1347393.HG726021_gene517	NA	NA
UHGV-1313100_42	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1313100_43	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1313100_43	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1313100_43	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-1313100_43	eggNOG-mapper	743719.PaelaDRAFT_5633	Metallo-beta-lactamase superfamily	NA
UHGV-1313100_43	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1313100_43	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1313100_43	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-1313100_44	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1313100_44	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1313100_44	UniRef90	UniRef90_A0A3R6HTW1	Recombinase	NA
UHGV-1313100_44	eggNOG-mapper	445970.ALIPUT_02693	Recombinase, phage RecT family	NA
UHGV-1313100_44	Pfam	PF03837	RecT family	RecT
UHGV-1313100_44	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1313100_44	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1313100_44	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1313100_45	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1313100_45	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1313100_45	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-1313100_45	eggNOG-mapper	1121285.AUFK01000002_gene9	nuclear chromosome segregation	NA
UHGV-1313100_45	Pfam	PF13476	AAA domain	AAA_23
UHGV-1313100_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1313100_45	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1313100_47	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1313100_47	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1313100_47	UniRef90	UniRef90_A0A3E5E957	dUTPase domain-containing protein	NA
UHGV-1313100_47	eggNOG-mapper	1122128.AUEE01000007_gene1660	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1313100_47	Pfam	PF00692	dUTPase	dUTPase
UHGV-1313100_47	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1313100_47	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1313100_48	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1313100_48	UniRef90	UniRef90_A0A646FRV7	Rha family transcriptional regulator	NA
UHGV-1313100_48	eggNOG-mapper	1347393.HG726022_gene3608	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1313100_48	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1313100_48	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1313100_48	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1313100_48	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-1313100_49	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1313100_49	UniRef90	UniRef90_A0A646FV86	Recombinase	NA
UHGV-1313100_49	eggNOG-mapper	585502.HMPREF0645_2608	NA	NA
UHGV-1313100_49	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1313100_49	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1313100_49	Structural annotation	PF05766	NA	NA
UHGV-1313100_51	PHROG	phrog_16858	NA	unknown function
UHGV-1313100_51	UniRef90	UniRef90_A0A3D6B2E4	ArsR family transcriptional regulator	NA
UHGV-1313100_52	UniRef90	UniRef90_A0A3R5ZKQ5	XRE family transcriptional regulator	NA
UHGV-1313100_52	eggNOG-mapper	886379.AEWI01000013_gene2144	Helix-turn-helix XRE-family like proteins	NA
UHGV-1313100_52	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1313100_52	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA