UHGV-1313782

Genome information

Genome length 29,675 bps

CDS count 59

Completeness 73.40% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-1313782
vOTU ID	vOTU-024578
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Han_2018_ERR1398098_NODE_737_length_29675_cov_8.695611
BioSample	SAMEA3951678
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.18
Jumbo phage	No

Genome content
Genome length	29,675 bps
GC content	54.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.27%
Average CDS length	463.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1313782_1	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1313782_1	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-1313782_1	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-1313782_1	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1313782_2	Structural annotation	PF18152	NA	NA
UHGV-1313782_3	Structural annotation	PF06810	NA	NA
UHGV-1313782_4	PHROG	phrog_544	major head protein	head and packaging
UHGV-1313782_4	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-1313782_4	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-1313782_4	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1313782_4	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1313782_6	PHROG	phrog_17977	NA	unknown function
UHGV-1313782_6	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1313782_6	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1313782_7	Structural annotation	PF11367	NA	NA
UHGV-1313782_8	PHROG	phrog_885	major tail protein	tail
UHGV-1313782_8	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1313782_8	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1313782_8	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1313782_9	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-1313782_11	PHROG	phrog_7115	NA	unknown function
UHGV-1313782_11	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-1313782_11	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-1313782_11	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-1313782_11	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-1313782_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1313782_12	UniRef90	UniRef90_A0A3D1JBH2	Phage tail protein (Fragment)	NA
UHGV-1313782_12	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-1313782_12	COG	COG1511	NA	NA
UHGV-1313782_12	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1313782_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1313782_14	PHROG	phrog_13879	NA	unknown function
UHGV-1313782_14	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-1313782_14	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-1313782_15	Structural annotation	PF00354	NA	NA
UHGV-1313782_16	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-1313782_18	PHROG	phrog_1382	NA	unknown function
UHGV-1313782_18	eggNOG-mapper	1336234.JAGN01000004_gene512	NA	NA
UHGV-1313782_19	PHROG	phrog_1863	NA	unknown function
UHGV-1313782_19	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-1313782_20	PHROG	phrog_13256	NA	unknown function
UHGV-1313782_20	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-1313782_22	PHROG	phrog_18955	NA	unknown function
UHGV-1313782_22	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-1313782_22	eggNOG-mapper	696281.Desru_3652	exopolysaccharide biosynthesis protein	NA
UHGV-1313782_22	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-1313782_22	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-1313782_22	Structural annotation	PF09992, COG4632	NA	NA
UHGV-1313782_23	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1313782_23	PHROG	phrog_894	endolysin	lysis
UHGV-1313782_23	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-1313782_23	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-1313782_23	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1313782_23	COG	COG3108	NA	NA
UHGV-1313782_23	Structural annotation	PF05951, COG3108	NA	NA
UHGV-1313782_25	UniRef90	UniRef90_R6DRH1	Putative TnpX site-specific recombinase	NA
UHGV-1313782_25	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-1313782_25	Structural annotation	PF09889, COG4068	NA	NA
UHGV-1313782_26	PHROG	phrog_25567	NA	unknown function
UHGV-1313782_26	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-1313782_26	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-1313782_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1313782_26	Structural annotation	NF040522, COG2944	NA	NA
UHGV-1313782_29	PHROG	phrog_3754	NA	unknown function
UHGV-1313782_29	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1313782_30	PHROG	phrog_21718	NA	unknown function
UHGV-1313782_30	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1313782_31	PHROG	phrog_22984	NA	unknown function
UHGV-1313782_32	PHROG	phrog_16490	NA	unknown function
UHGV-1313782_32	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1313782_33	PHROG	phrog_20016	NA	unknown function
UHGV-1313782_33	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-1313782_33	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1313782_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1313782_34	Structural annotation	PF12510	NA	NA
UHGV-1313782_35	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-1313782_36	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1313782_36	PHROG	phrog_95	integrase	integration and excision
UHGV-1313782_36	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-1313782_36	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1313782_36	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1313782_36	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1313782_36	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1313782_36	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-1313782_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1313782_37	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1313782_37	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-1313782_40	PHROG	phrog_585	NA	unknown function
UHGV-1313782_40	UniRef90	UniRef90_UPI00129D2984	NA	NA
UHGV-1313782_40	eggNOG-mapper	1423755.BAML01000004_gene410	NA	NA
UHGV-1313782_40	Pfam	PF10711	NA	DUF2513
UHGV-1313782_40	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-1313782_41	UniRef90	UniRef90_UPI0018976583	helix-turn-helix domain-containing protein	NA
UHGV-1313782_41	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1313782_41	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-1313782_42	UniRef90	UniRef90_U2BKK8	HTH cro/C1-type domain-containing protein	NA
UHGV-1313782_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1313782_42	Structural annotation	PF13560, NF040507, COG1396	NA	NA
UHGV-1313782_43	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-1313782_43	UniRef90	UniRef90_UPI0019674AC1	Rha family transcriptional regulator	NA
UHGV-1313782_43	eggNOG-mapper	293826.Amet_4052	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1313782_43	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1313782_43	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1313782_43	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1313782_43	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1313782_47	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1313782_49	PHROG	phrog_4973	NA	unknown function
UHGV-1313782_49	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-1313782_49	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1313782_49	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1313782_50	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1313782_50	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-1313782_50	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-1313782_50	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1313782_50	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1313782_51	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1313782_51	UniRef90	UniRef90_A0A3D1PJF8	Single-stranded DNA-binding protein	NA
UHGV-1313782_51	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-1313782_51	Pfam	PF04404	ERF superfamily	ERF
UHGV-1313782_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1313782_51	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1313782_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1313782_52	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1313782_52	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1313782_52	Structural annotation	PF05772	NA	NA
UHGV-1313782_53	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1313782_53	UniRef90	UniRef90_UPI001C122365	HNH endonuclease	NA
UHGV-1313782_53	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1313782_54	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1313782_54	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1313782_54	UniRef90	UniRef90_A0A1C5QDM6	Single-stranded DNA-binding protein	NA
UHGV-1313782_54	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-1313782_54	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1313782_54	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1313782_54	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1313782_54	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1313782_54	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1313782_55	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1313782_55	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-1313782_55	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-1313782_55	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-1313782_57	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1313782_57	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1313782_57	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1313782_57	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-1313782_57	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1313782_59	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1313782_59	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1313782_59	UniRef90	UniRef90_K1R461	DNA-cytosine methyltransferase	NA
UHGV-1313782_59	eggNOG-mapper	665956.HMPREF1032_02671	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1313782_59	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1313782_59	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1313782_59	COG	COG0270	DNA-cytosine methylase	NA