UHGV-1314790

Genome information

Genome length 41,337 bps

CDS count 59

Completeness 92.32% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-1314790
vOTU ID	vOTU-009776
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	SRS415864\|NODE_32_length_41337_cov_9.875660
BioSample	SAMN02044689
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.39
Jumbo phage	No

Genome content
Genome length	41,337 bps
GC content	38.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.50%
Average CDS length	628.22 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1314790_1	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1314790_1	UniRef90	UniRef90_A0A415G6V0	HNH endonuclease	NA
UHGV-1314790_1	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-1314790_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1314790_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1314790_1	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1314790_2	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1314790_2	UniRef90	UniRef90_A0A3D0FZE1	Transposase	NA
UHGV-1314790_2	eggNOG-mapper	44251.PDUR_04680	transposase activity	NA
UHGV-1314790_2	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1314790_2	Structural annotation	PF07141	NA	NA
UHGV-1314790_3	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-1314790_3	PHROG	phrog_2649	endolysin	lysis
UHGV-1314790_3	UniRef90	UniRef90_UPI000BF2849A	M15 family metallopeptidase	NA
UHGV-1314790_3	eggNOG-mapper	1123075.AUDP01000024_gene1109	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-1314790_3	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-1314790_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1314790_3	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-1314790_4	PHROG	phrog_1863	NA	unknown function
UHGV-1314790_4	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-1314790_4	eggNOG-mapper	768486.EHR_09640	NA	NA
UHGV-1314790_5	PHROG	phrog_443	holin	lysis
UHGV-1314790_5	UniRef90	UniRef90_UPI001EE0823A	holin	NA
UHGV-1314790_5	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-1314790_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1314790_5	Structural annotation	PF16945	NA	NA
UHGV-1314790_7	UniRef90	UniRef90_R7F9V4	Putative RNA polymerase sigma factor sigma-F	NA
UHGV-1314790_7	eggNOG-mapper	1131462.DCF50_p1816	DNA-templated transcription, initiation	NA
UHGV-1314790_7	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1314790_7	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1314790_7	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-1314790_8	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1314790_8	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1314790_8	UniRef90	UniRef90_A0A1C7GAG0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1314790_8	eggNOG-mapper	33035.JPJF01000081_gene248	dUTPase	NA
UHGV-1314790_8	Pfam	PF00692	dUTPase	dUTPase
UHGV-1314790_8	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-1314790_8	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1314790_8	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1314790_9	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-1314790_9	PHROG	phrog_5131	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1314790_9	UniRef90	UniRef90_A0A4Y5FGW2	Thymidylate synthase	NA
UHGV-1314790_9	eggNOG-mapper	467200.ACFA01000003_gene1689	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	NA
UHGV-1314790_9	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-1314790_9	COG	COG0207	Thymidylate synthase	NA
UHGV-1314790_9	Structural annotation	PF00303, MF_01686, TIGR03283, COG0207	NA	NA
UHGV-1314790_10	KOfam	K18534	K18534; MPBQ/MSBQ methyltransferase [EC:2.1.1.295]	NA
UHGV-1314790_10	PHROG	phrog_4752	tRNA methyltransferase	other
UHGV-1314790_10	UniRef90	UniRef90_UPI0011DC7D29	class I SAM-dependent methyltransferase	NA
UHGV-1314790_10	Pfam	PF13489	Methyltransferase domain	Methyltransf_23
UHGV-1314790_10	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1314790_10	Structural annotation	PF03291, MF_02057, NF008264, COG2227	NA	NA
UHGV-1314790_11	PHROG	phrog_761	thymidylate kinase	other
UHGV-1314790_11	UniRef90	UniRef90_I6TX96	Adenylate kinase isoenzyme 6 homolog	NA
UHGV-1314790_11	eggNOG-mapper	694429.Pyrfu_0101	Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates	NA
UHGV-1314790_11	Pfam	PF13238	AAA domain	AAA_18
UHGV-1314790_11	COG	COG1936	Broad-specificity NMP kinase	NA
UHGV-1314790_11	Structural annotation	PF01712, MF_00109, NF010553, COG1428	NA	NA
UHGV-1314790_12	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1314790_12	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1314790_12	UniRef90	UniRef90_A0A259V1C2	SF3 helicase domain-containing protein	NA
UHGV-1314790_12	eggNOG-mapper	1120985.AUMI01000018_gene2908	D5 N terminal like	NA
UHGV-1314790_12	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1314790_12	Pfam	PF19263	NA	DUF5906
UHGV-1314790_12	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1314790_12	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1314790_12	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-1314790_14	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1314790_14	UniRef90	UniRef90_A0A1G5G0M3	DNA polymerase	NA
UHGV-1314790_14	eggNOG-mapper	1280692.AUJL01000009_gene2997	DNA polymerase elongation subunit (Family B)	NA
UHGV-1314790_14	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-1314790_14	Structural annotation	PF00136, MF_04100, NF004416, COG0417	NA	NA
UHGV-1314790_15	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1314790_15	UniRef90	UniRef90_A0A658K0A9	NA	NA
UHGV-1314790_15	eggNOG-mapper	742740.HMPREF9474_02367	NA	NA
UHGV-1314790_15	Structural annotation	PF05037	NA	NA
UHGV-1314790_16	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1314790_16	UniRef90	UniRef90_UPI0007C86507	AAA family ATPase	NA
UHGV-1314790_16	eggNOG-mapper	742740.HMPREF9474_02369	AAA domain	NA
UHGV-1314790_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-1314790_16	Structural annotation	PF13479, TIGR01618, COG2087	NA	NA
UHGV-1314790_17	PHROG	phrog_3639	minor tail protein	tail
UHGV-1314790_17	Structural annotation	PF08931	NA	NA
UHGV-1314790_19	PHROG	phrog_5889	NA	unknown function
UHGV-1314790_19	UniRef90	UniRef90_UPI0012DEC7D6	HD family phosphohydrolase	NA
UHGV-1314790_19	eggNOG-mapper	742740.HMPREF9474_02372	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-1314790_19	Pfam	PF01966	HD domain	HD
UHGV-1314790_19	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-1314790_19	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-1314790_20	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1314790_20	UniRef90	UniRef90_A0A415TAD1	VRR-NUC domain-containing protein	NA
UHGV-1314790_20	eggNOG-mapper	445335.CBN_1355	VRR_NUC	NA
UHGV-1314790_20	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-1314790_20	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-1314790_22	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1314790_22	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1314790_22	UniRef90	UniRef90_A0A3Q8S3A2	DEAD/DEAH box helicase	NA
UHGV-1314790_22	eggNOG-mapper	742740.HMPREF9474_02377	snf2 family	NA
UHGV-1314790_22	PADLOC	DpdE_00003	DpdE	DPD
UHGV-1314790_22	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1314790_22	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1314790_22	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1314790_22	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-1314790_24	PHROG	phrog_6058	NA	unknown function
UHGV-1314790_24	UniRef90	UniRef90_A0A101WT85	Modification methylase SinI	NA
UHGV-1314790_24	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-1314790_24	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1314790_25	UniRef90	UniRef90_A0A0K2JCR2	XRE family transcriptional regulator	NA
UHGV-1314790_25	Pfam	PF08667	BetR domain	BetR
UHGV-1314790_25	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1314790_27	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1314790_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1314790_27	UniRef90	UniRef90_UPI00189A4C5F	helix-turn-helix domain-containing protein	NA
UHGV-1314790_27	eggNOG-mapper	332101.JIBU02000023_gene4733	Helix-turn-helix domain protein	NA
UHGV-1314790_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1314790_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1314790_27	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-1314790_28	UniRef90	UniRef90_A0A355UL60	Site-specific integrase (Fragment)	NA
UHGV-1314790_28	eggNOG-mapper	1321779.HMPREF1984_01339	Belongs to the 'phage' integrase family	NA
UHGV-1314790_28	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1314790_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1314790_31	PHROG	phrog_421	NA	unknown function
UHGV-1314790_31	UniRef90	UniRef90_A0A7U9X7X4	NA	NA
UHGV-1314790_31	eggNOG-mapper	97139.C824_00143	NA	NA
UHGV-1314790_31	Pfam	PF10979	NA	DUF2786
UHGV-1314790_31	Structural annotation	PF10979	NA	NA
UHGV-1314790_32	eggNOG-mapper	93220.LV28_00030	NA	NA
UHGV-1314790_32	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1314790_35	eggNOG-mapper	498761.HM1_0045	NA	NA
UHGV-1314790_36	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1314790_36	UniRef90	UniRef90_A0A1Y4J1N7	Transcriptional regulator	NA
UHGV-1314790_36	eggNOG-mapper	537007.BLAHAN_04265	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1314790_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1314790_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1314790_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1314790_38	PHROG	phrog_1220	head protein	head and packaging
UHGV-1314790_38	eggNOG-mapper	742740.HMPREF9474_02259	NA	NA
UHGV-1314790_38	Structural annotation	PF16569, PF21567	NA	NA
UHGV-1314790_39	PHROG	phrog_538	minor tail protein	tail
UHGV-1314790_39	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1314790_39	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1314790_39	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1314790_39	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1314790_40	PHROG	phrog_36410	NA	unknown function
UHGV-1314790_40	UniRef90	UniRef90_A0A415G8B5	Phage tail family protein	NA
UHGV-1314790_40	eggNOG-mapper	411473.RUMCAL_03181	Phage tail protein	NA
UHGV-1314790_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1314790_40	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1314790_41	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1314790_41	PHROG	phrog_5218	NA	unknown function
UHGV-1314790_41	UniRef90	UniRef90_A0A415G8B3	PhageMin_Tail domain-containing protein	NA
UHGV-1314790_41	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-1314790_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1314790_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1314790_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1314790_44	PHROG	phrog_88	major tail protein	tail
UHGV-1314790_44	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-1314790_44	eggNOG-mapper	66692.ABC1339	phage major tail protein, phi13 family	NA
UHGV-1314790_44	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1314790_44	COG	COG5492	NA	NA
UHGV-1314790_44	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1314790_45	Structural annotation	PF05657	NA	NA
UHGV-1314790_46	Structural annotation	TIGR01725	NA	NA
UHGV-1314790_47	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-1314790_47	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-1314790_47	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1314790_48	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-1314790_48	eggNOG-mapper	1196322.A370_05715	NA	NA
UHGV-1314790_48	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1314790_49	UniRef90	UniRef90_A0A7C6X0D9	Cadherin-like beta sandwich domain-containing protein	NA
UHGV-1314790_49	eggNOG-mapper	1232453.BAIF02000058_gene1628	Phage major capsid protein E	NA
UHGV-1314790_49	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1314790_49	Structural annotation	PF18316	NA	NA
UHGV-1314790_50	PHROG	phrog_10	major head protein	head and packaging
UHGV-1314790_50	UniRef90	UniRef90_UPI00156E5E69	phage major capsid protein	NA
UHGV-1314790_50	eggNOG-mapper	1536769.P40081_01075	Phage capsid family	NA
UHGV-1314790_50	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1314790_50	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1314790_50	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1314790_50	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1314790_51	KOfam	K06904	NA	NA
UHGV-1314790_51	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1314790_51	UniRef90	UniRef90_UPI00156EFB92	HK97 family phage prohead protease	NA
UHGV-1314790_51	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-1314790_51	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1314790_51	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1314790_51	COG	COG3740	Phage head maturation protease	NA
UHGV-1314790_51	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1314790_52	PHROG	phrog_12	portal protein	head and packaging
UHGV-1314790_52	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-1314790_52	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-1314790_52	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1314790_52	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1314790_52	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1314790_53	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-1314790_53	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1314790_56	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1314790_56	UniRef90	UniRef90_A0A415G6S8	Terminase large subunit	NA
UHGV-1314790_56	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-1314790_56	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1314790_56	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1314790_56	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1314790_56	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1314790_58	PHROG	phrog_19556	tail fiber protein; host specificity	tail
UHGV-1314790_58	eggNOG-mapper	1235798.C817_03466	NA	NA
UHGV-1314790_59	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA