UHGV-1317866

Genome information

Genome length 23,192 bps

CDS count 28

Completeness 61.71% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-1317866
vOTU ID	vOTU-033513
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Han_2018_ERR1398261_NODE_575_length_23192_cov_4.213770
BioSample	SAMEA3951787
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.77
Jumbo phage	No

Genome content
Genome length	23,192 bps
GC content	41.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	94.50%
Average CDS length	787.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1317866_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1317866_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1317866_1	UniRef90	UniRef90_A6BEV3	Resolvase, N-terminal domain protein	NA
UHGV-1317866_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-1317866_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-1317866_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1317866_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1317866_1	Structural annotation	PF07508, PF14282, NF041201	NA	NA
UHGV-1317866_2	eggNOG-mapper	1123288.SOV_6c00720	NA	NA
UHGV-1317866_3	PHROG	phrog_1914	NA	unknown function
UHGV-1317866_3	UniRef90	UniRef90_UPI001E0FC8E6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1317866_3	eggNOG-mapper	1235802.C823_05682	NA	NA
UHGV-1317866_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1317866_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1317866_3	Structural annotation	PF06114, MF_00745, COG2856	NA	NA
UHGV-1317866_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1317866_4	UniRef90	UniRef90_UPI001D81BEC2	transcriptional regulator	NA
UHGV-1317866_4	eggNOG-mapper	997296.PB1_16114	Protein conserved in bacteria	NA
UHGV-1317866_4	COG	COG1426	NA	NA
UHGV-1317866_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1317866_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1317866_5	PHROG	phrog_1493	endolysin	lysis
UHGV-1317866_5	UniRef90	UniRef90_UPI001D016E56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1317866_5	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-1317866_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1317866_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1317866_5	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1317866_5	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-1317866_6	PHROG	phrog_199	holin	lysis
UHGV-1317866_6	UniRef90	UniRef90_A0A173VKF9	Holin	NA
UHGV-1317866_6	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-1317866_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1317866_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1317866_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1317866_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1317866_7	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-1317866_7	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1317866_7	UniRef90	UniRef90_UPI00156E217C	Ig-like domain-containing protein	NA
UHGV-1317866_7	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-1317866_7	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1317866_7	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1317866_7	Structural annotation	PF10651	NA	NA
UHGV-1317866_8	PHROG	phrog_19695	NA	unknown function
UHGV-1317866_8	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-1317866_8	Structural annotation	PF19714	NA	NA
UHGV-1317866_9	PHROG	phrog_25635	NA	unknown function
UHGV-1317866_9	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-1317866_9	eggNOG-mapper	411462.DORLON_00774	NA	NA
UHGV-1317866_9	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-1317866_9	Structural annotation	PF20747	NA	NA
UHGV-1317866_10	PHROG	phrog_538	minor tail protein	tail
UHGV-1317866_10	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1317866_10	eggNOG-mapper	411462.DORLON_00775	NA	NA
UHGV-1317866_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1317866_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1317866_11	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-1317866_11	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1317866_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1317866_12	UniRef90	UniRef90_A0A174JJE7	Phage-related protein	NA
UHGV-1317866_12	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-1317866_12	COG	COG1511	NA	NA
UHGV-1317866_12	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1317866_13	PHROG	phrog_706	NA	unknown function
UHGV-1317866_13	UniRef90	UniRef90_A6BEQ8	Bacteriophage Gp15 protein	NA
UHGV-1317866_13	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-1317866_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1317866_13	Structural annotation	PF06854	NA	NA
UHGV-1317866_14	PHROG	phrog_4450	NA	unknown function
UHGV-1317866_14	eggNOG-mapper	411462.DORLON_00780	NA	NA
UHGV-1317866_14	Pfam	PF20378	NA	DUF6673
UHGV-1317866_14	Structural annotation	PF20378	NA	NA
UHGV-1317866_15	PHROG	phrog_3099	NA	unknown function
UHGV-1317866_15	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-1317866_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1317866_16	PHROG	phrog_3266	tail completion	connector
UHGV-1317866_16	eggNOG-mapper	742765.HMPREF9457_02131	NA	NA
UHGV-1317866_16	Structural annotation	PF12691	NA	NA
UHGV-1317866_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1317866_17	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-1317866_17	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-1317866_17	Structural annotation	PF11114	NA	NA
UHGV-1317866_18	PHROG	phrog_3366	NA	unknown function
UHGV-1317866_18	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-1317866_18	Pfam	PF20536	NA	DUF6751
UHGV-1317866_18	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1317866_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1317866_19	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-1317866_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-1317866_20	UniRef90	UniRef90_A0A391PHY8	Phage capsid protein	NA
UHGV-1317866_20	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-1317866_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1317866_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1317866_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1317866_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1317866_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1317866_21	eggNOG-mapper	411462.DORLON_00787	NA	NA
UHGV-1317866_21	AcrCatalog	cluster_74817	NA	NA
UHGV-1317866_21	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-1317866_22	KOfam	K07584	NA	NA
UHGV-1317866_22	PHROG	phrog_4478	peptidase	other
UHGV-1317866_22	UniRef90	UniRef90_A0A173TUJ7	Predicted ribosomal protein	NA
UHGV-1317866_22	eggNOG-mapper	411462.DORLON_00788	Pfam:Peptidase_C108	NA
UHGV-1317866_22	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1317866_22	COG	COG2868	NA	NA
UHGV-1317866_22	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-1317866_23	PHROG	phrog_3711	NA	unknown function
UHGV-1317866_23	eggNOG-mapper	411462.DORLON_00789	NA	NA
UHGV-1317866_24	PHROG	phrog_21033	NA	unknown function
UHGV-1317866_24	UniRef90	UniRef90_A0A173VG74	Phage minor capsid protein 2	NA
UHGV-1317866_24	eggNOG-mapper	742765.HMPREF9457_02121	NA	NA
UHGV-1317866_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1317866_24	COG	COG2369	NA	NA
UHGV-1317866_24	Structural annotation	PF06152	NA	NA
UHGV-1317866_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-1317866_25	UniRef90	UniRef90_A6BES5	Phage minor capsid protein	NA
UHGV-1317866_25	eggNOG-mapper	411462.DORLON_00795	COG NOG25118 non supervised orthologous group	NA
UHGV-1317866_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1317866_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1317866_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1317866_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1317866_26	UniRef90	UniRef90_B0G3C9	Phage terminase, large subunit, PBSX family	NA
UHGV-1317866_26	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-1317866_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1317866_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1317866_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1317866_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-1317866_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1317866_27	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1317866_27	UniRef90	UniRef90_A0A391P905	DNA-binding protein	NA
UHGV-1317866_27	eggNOG-mapper	411461.DORFOR_00751	DNA packaging	NA
UHGV-1317866_27	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-1317866_27	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1317866_27	COG	COG5484	NA	NA
UHGV-1317866_27	Structural annotation	NF040601, COG5484	NA	NA
UHGV-1317866_28	UniRef90	UniRef90_A0A3A9APU0	NA	NA
UHGV-1317866_28	eggNOG-mapper	931626.Awo_c26000	NA	NA
UHGV-1317866_28	Pfam	PF14213	NA	DUF4325
UHGV-1317866_28	COG	COG4585	Signal transduction histidine kinase ComP	NA