UHGV-1323246

Genome information

vOTU vOTU-020818

Genome length 33,230 bps

CDS count 46

Completeness 80.61% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-1323246
vOTU ID	vOTU-020818
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	SRS938427\|NODE_3_length_33230_cov_62.774069
BioSample	SAMN03659396
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.79
Jumbo phage	No

Genome content
Genome length	33,230 bps
GC content	36.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.50%
Average CDS length	657.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1323246_1	PHROG	phrog_376	tail protein	tail
UHGV-1323246_1	UniRef90	UniRef90_A0A7S5Y9K8	Tail tubular protein B	NA
UHGV-1323246_1	eggNOG-mapper	1401067.HMPREF0872_06775	NA	NA
UHGV-1323246_1	Structural annotation	PF19056, PF20328, TIGR02658, COG2706	NA	NA
UHGV-1323246_2	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-1323246_2	UniRef90	UniRef90_UPI001D08FF44	NA	NA
UHGV-1323246_2	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-1323246_2	Structural annotation	PF11039, MF_02210, NF000165, COG1247	NA	NA
UHGV-1323246_3	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1323246_3	eggNOG-mapper	1401067.HMPREF0872_06765	NA	NA
UHGV-1323246_3	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-1323246_4	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1323246_4	UniRef90	UniRef90_A0A096AJQ8	NlpC/P60 domain-containing protein	NA
UHGV-1323246_4	eggNOG-mapper	1401067.HMPREF0872_06760	NA	NA
UHGV-1323246_4	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1323246_4	Structural annotation	PF01464, COG0741	NA	NA
UHGV-1323246_5	PHROG	phrog_9880	NA	unknown function
UHGV-1323246_5	UniRef90	UniRef90_A0A239Z8B8	LPD3 domain-containing protein	NA
UHGV-1323246_5	eggNOG-mapper	568816.Acin_1824	NA	NA
UHGV-1323246_6	PHROG	phrog_13481	tail fiber protein	tail
UHGV-1323246_6	UniRef90	UniRef90_A0A2S7ZGN5	Pectate_lyase_3 domain-containing protein	NA
UHGV-1323246_6	eggNOG-mapper	1401067.HMPREF0872_07835	NA	NA
UHGV-1323246_6	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-1323246_6	Structural annotation	PF05096, PF03906, MF_03008, TIGR03866, COG3204	NA	NA
UHGV-1323246_8	PHROG	phrog_23091	NA	unknown function
UHGV-1323246_8	Structural annotation	PF05105, NF035928	NA	NA
UHGV-1323246_10	PHROG	phrog_23091	NA	unknown function
UHGV-1323246_10	eggNOG-mapper	546273.VEIDISOL_01083	LysM domain	NA
UHGV-1323246_10	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-1323246_10	COG	COG1388	LysM repeat	NA
UHGV-1323246_12	PHROG	phrog_26249	NA	unknown function
UHGV-1323246_12	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-1323246_12	eggNOG-mapper	546273.VEIDISOL_01083	LysM domain	NA
UHGV-1323246_12	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-1323246_12	COG	COG1388	LysM repeat	NA
UHGV-1323246_12	Structural annotation	PF21277	NA	NA
UHGV-1323246_13	PHROG	phrog_10797	NA	unknown function
UHGV-1323246_13	UniRef90	UniRef90_UPI0018C518C1	glycoprotease	NA
UHGV-1323246_13	eggNOG-mapper	883156.HMPREF9282_01266	NA	NA
UHGV-1323246_13	Structural annotation	PF06531	NA	NA
UHGV-1323246_15	KOfam	K14059	int; integrase	NA
UHGV-1323246_15	PHROG	phrog_1	integrase	integration and excision
UHGV-1323246_15	UniRef90	UniRef90_A0A239Z9S1	Tyrosine recombinase XerC	NA
UHGV-1323246_15	eggNOG-mapper	1401067.HMPREF0872_00475	Belongs to the 'phage' integrase family	NA
UHGV-1323246_15	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1323246_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1323246_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1323246_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1323246_15	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1323246_16	PHROG	phrog_20936	NA	unknown function
UHGV-1323246_16	UniRef90	UniRef90_UPI001D086FA7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1323246_16	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-1323246_16	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1323246_16	Structural annotation	PF06114	NA	NA
UHGV-1323246_18	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1323246_18	UniRef90	UniRef90_UPI001D073245	helix-turn-helix transcriptional regulator	NA
UHGV-1323246_18	eggNOG-mapper	861450.HMPREF0080_02022	Helix-turn-helix XRE-family like proteins	NA
UHGV-1323246_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1323246_18	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1323246_18	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1323246_19	PHROG	phrog_7735	excisionase	integration and excision
UHGV-1323246_19	UniRef90	UniRef90_A0A2S7ZGX8	HTH_17 domain-containing protein	NA
UHGV-1323246_19	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1323246_19	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-1323246_21	Structural annotation	NF008912	NA	NA
UHGV-1323246_22	PHROG	phrog_674	NA	unknown function
UHGV-1323246_22	UniRef90	UniRef90_UPI001D090BA8	NA	NA
UHGV-1323246_22	eggNOG-mapper	1415775.U729_15	NA	NA
UHGV-1323246_22	Pfam	PF07083	NA	DUF1351
UHGV-1323246_22	Structural annotation	PF07083	NA	NA
UHGV-1323246_23	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1323246_23	UniRef90	UniRef90_UPI001D07B780	RAD52 family DNA repair protein	NA
UHGV-1323246_23	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-1323246_23	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1323246_23	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-1323246_24	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1323246_24	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-1323246_24	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-1323246_26	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1323246_26	UniRef90	UniRef90_UPI0019608C6C	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-1323246_26	eggNOG-mapper	565664.EFXG_01794	Phage replisome organizer, N-terminal domain protein	NA
UHGV-1323246_26	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1323246_26	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1323246_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1323246_26	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-1323246_27	PHROG	phrog_9804	NA	unknown function
UHGV-1323246_27	UniRef90	UniRef90_A0A3A9I1A3	Inhibitor_G39P domain-containing protein	NA
UHGV-1323246_27	Structural annotation	PF11417	NA	NA
UHGV-1323246_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1323246_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1323246_29	UniRef90	UniRef90_A0A239Z9X8	Single-stranded DNA-binding protein	NA
UHGV-1323246_29	eggNOG-mapper	936589.HMPREF1521_1228	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1323246_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1323246_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1323246_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1323246_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1323246_29	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1323246_31	PHROG	phrog_1672	NA	unknown function
UHGV-1323246_31	UniRef90	UniRef90_F5L204	Conserved domain protein	NA
UHGV-1323246_32	PHROG	phrog_11227	protease	other
UHGV-1323246_32	UniRef90	UniRef90_A0A8J6Z9T4	Membrane protease subunit	NA
UHGV-1323246_32	eggNOG-mapper	716544.wcw_0668	NA	NA
UHGV-1323246_33	PHROG	phrog_2882	DNA methyltransferase	other
UHGV-1323246_33	UniRef90	UniRef90_UPI000E75FDEB	DNA methyltransferase	NA
UHGV-1323246_33	eggNOG-mapper	565653.EGBG_01954	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1323246_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1323246_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1323246_33	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1323246_34	PHROG	phrog_918	NA	unknown function
UHGV-1323246_34	UniRef90	UniRef90_UPI001960DED1	NA	NA
UHGV-1323246_34	eggNOG-mapper	1401067.HMPREF0872_03440	NA	NA
UHGV-1323246_34	Pfam	PF19791	NA	DUF6275
UHGV-1323246_34	Structural annotation	PF19791	NA	NA
UHGV-1323246_35	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1323246_35	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-1323246_35	eggNOG-mapper	1200557.JHWV01000001_gene280	NA	NA
UHGV-1323246_35	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1323246_36	Structural annotation	PF02796, TIGR04381, COG2771	NA	NA
UHGV-1323246_37	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1323246_37	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1323246_37	UniRef90	UniRef90_A0A2S7ZGW5	dUTP diphosphatase	NA
UHGV-1323246_37	eggNOG-mapper	66692.ABC2847	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1323246_37	Pfam	PF00692	dUTPase	dUTPase
UHGV-1323246_37	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-1323246_37	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1323246_37	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1323246_38	PHROG	phrog_774	NA	unknown function
UHGV-1323246_38	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1323246_41	PHROG	phrog_21026	NA	unknown function
UHGV-1323246_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1323246_43	UniRef90	UniRef90_UPI001959B6F9	NA	NA
UHGV-1323246_43	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-1323246_43	Structural annotation	PF07374	NA	NA
UHGV-1323246_46	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1323246_46	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1323246_46	UniRef90	UniRef90_A0A2S7ZGQ0	Terminase small subunit	NA
UHGV-1323246_46	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-1323246_46	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1323246_46	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1323246_46	Structural annotation	PF03592, COG3728	NA	NA