UHGV-1323337

Genome information

vOTU vOTU-020384

Genome length 27,516 bps

CDS count 44

Completeness 69.74% (medium-quality)

geNomad score 0.9631

Prediction confidence Confident

Genome information
Genome ID	UHGV-1323337
vOTU ID	vOTU-020384
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	SRS415881\|NODE_32_length_27516_cov_5.537089
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9631
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.2
Jumbo phage	No

Genome content
Genome length	27,516 bps
GC content	45.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	91.02%
Average CDS length	573.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1323337_1	PHROG	phrog_16951	NA	unknown function
UHGV-1323337_1	UniRef90	UniRef90_A0A1G4FJP8	Phage portal protein, HK97 family	NA
UHGV-1323337_1	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-1323337_1	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1323337_1	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1323337_1	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1323337_2	PHROG	phrog_10	major head protein	head and packaging
UHGV-1323337_2	UniRef90	UniRef90_A0A7G8TDY6	Phage major capsid protein	NA
UHGV-1323337_2	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-1323337_2	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1323337_2	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1323337_2	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1323337_2	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1323337_3	PHROG	phrog_749	NA	unknown function
UHGV-1323337_3	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-1323337_4	PHROG	phrog_19734	NA	unknown function
UHGV-1323337_4	UniRef90	UniRef90_UPI00058D8276	phage head closure protein	NA
UHGV-1323337_4	eggNOG-mapper	1211817.CCAT010000053_gene2134	NA	NA
UHGV-1323337_4	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1323337_5	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1323337_5	UniRef90	UniRef90_A0A425XBL1	HK97 gp10 family phage protein	NA
UHGV-1323337_5	eggNOG-mapper	1122146.AUHP01000010_gene1062	NA	NA
UHGV-1323337_5	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1323337_6	eggNOG-mapper	1341157.RF007C_02620	NA	NA
UHGV-1323337_6	Structural annotation	PF05657	NA	NA
UHGV-1323337_7	PHROG	phrog_2175	protein with Ig domain	other
UHGV-1323337_7	eggNOG-mapper	1415774.U728_1247	NA	NA
UHGV-1323337_7	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1323337_8	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-1323337_8	Structural annotation	PF17388	NA	NA
UHGV-1323337_10	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1323337_10	UniRef90	UniRef90_A3DFW3	Tail tape measure protein TP901 core region	NA
UHGV-1323337_10	eggNOG-mapper	755731.Clo1100_0555	tail tape measure protein	NA
UHGV-1323337_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1323337_10	Structural annotation	COG5280	NA	NA
UHGV-1323337_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1323337_11	UniRef90	UniRef90_A0A358PXF7	Phage tail protein	NA
UHGV-1323337_11	eggNOG-mapper	994573.T472_0211980	tail component	NA
UHGV-1323337_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-1323337_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1323337_12	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1323337_12	UniRef90	UniRef90_UPI0004D8887A	phage tail protein	NA
UHGV-1323337_12	eggNOG-mapper	929506.CbC4_1228	Phage minor structural protein	NA
UHGV-1323337_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1323337_12	Pfam	PF07902	gp58-like protein	Gp58
UHGV-1323337_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1323337_12	COG	COG4926	Phage-related protein	NA
UHGV-1323337_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1323337_13	KOfam	K10068	SFTPD, SFTP4; pulmonary surfactant-associated protein D	NA
UHGV-1323337_13	PHROG	phrog_5073	tail fiber protein	tail
UHGV-1323337_13	eggNOG-mapper	2754.EH55_00535	NA	NA
UHGV-1323337_13	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1323337_13	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1323337_15	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-1323337_15	PHROG	phrog_18593	NA	unknown function
UHGV-1323337_15	UniRef90	UniRef90_UPI00189D24DB	alpha-amylase	NA
UHGV-1323337_15	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-1323337_15	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1323337_15	Structural annotation	PF14600	NA	NA
UHGV-1323337_16	KOfam	K07273	acm; lysozyme	NA
UHGV-1323337_16	PHROG	phrog_291	endolysin	lysis
UHGV-1323337_16	UniRef90	UniRef90_UPI000A269F4A	glycoside hydrolase family 25 protein	NA
UHGV-1323337_16	eggNOG-mapper	1105031.HMPREF1141_1412	family 25	NA
UHGV-1323337_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1323337_16	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1323337_18	PHROG	phrog_13256	NA	unknown function
UHGV-1323337_18	eggNOG-mapper	641112.ACOK01000073_gene2912	NA	NA
UHGV-1323337_19	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1323337_19	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1323337_19	UniRef90	UniRef90_A0A318L0W3	Putative RNase H-like HicB family nuclease	NA
UHGV-1323337_19	eggNOG-mapper	1235835.C814_03459	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1323337_19	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1323337_19	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1323337_19	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1323337_20	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1323337_20	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1323337_20	UniRef90	UniRef90_UPI000481630B	type II toxin-antitoxin system HicA family toxin	NA
UHGV-1323337_20	eggNOG-mapper	1235835.C814_03458	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1323337_20	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1323337_20	Structural annotation	PF07927	NA	NA
UHGV-1323337_21	KOfam	K14059	int; integrase	NA
UHGV-1323337_21	PHROG	phrog_1	integrase	integration and excision
UHGV-1323337_21	UniRef90	UniRef90_A0A3A9EVQ0	Site-specific integrase	NA
UHGV-1323337_21	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1323337_21	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1323337_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1323337_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1323337_21	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1323337_22	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1323337_22	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1323337_22	UniRef90	UniRef90_A0A4Y7R6M5	HicB-like domain-containing protein	NA
UHGV-1323337_22	eggNOG-mapper	138119.DSY3841	PFAM Uncharacterised protein family UPF0150	NA
UHGV-1323337_22	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1323337_22	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1323337_22	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1323337_23	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1323337_23	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1323337_23	UniRef90	UniRef90_UPI00129C297B	type II toxin-antitoxin system HicA family toxin	NA
UHGV-1323337_23	eggNOG-mapper	1121887.AUDK01000033_gene1450	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1323337_23	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1323337_23	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1323337_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1323337_25	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1323337_25	UniRef90	UniRef90_A0A0Z8IXD8	CI-like repressor, phage associated	NA
UHGV-1323337_25	eggNOG-mapper	936375.HMPREF1152_1044	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1323337_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1323337_25	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1323337_25	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-1323337_26	UniRef90	UniRef90_A0A350TVK0	XRE family transcriptional regulator	NA
UHGV-1323337_26	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-1323337_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1323337_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1323337_26	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1323337_28	NCBIFam	TIGR02098.1	MJ0042-type zinc finger domain-containing protein	NA
UHGV-1323337_29	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1323337_32	UniRef90	UniRef90_G9RSZ2	HTH cro/C1-type domain-containing protein	NA
UHGV-1323337_32	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1323337_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1323337_32	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1323337_34	PHROG	phrog_11939	NA	unknown function
UHGV-1323337_34	eggNOG-mapper	1004785.AMBLS11_01120	NA	NA
UHGV-1323337_36	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1323337_36	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-1323337_36	eggNOG-mapper	1203606.HMPREF1526_01889	replication terminator protein, phage associated	NA
UHGV-1323337_37	PHROG	phrog_1029	NA	unknown function
UHGV-1323337_37	eggNOG-mapper	1211817.CCAT010000049_gene2467	NA	NA
UHGV-1323337_37	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1323337_38	eggNOG-mapper	1304866.K413DRAFT_3014	NA	NA
UHGV-1323337_40	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1323337_40	UniRef90	UniRef90_A0A316RHU5	ATP-binding protein	NA
UHGV-1323337_40	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-1323337_40	Pfam	PF13479	AAA domain	AAA_24
UHGV-1323337_40	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1323337_41	PHROG	phrog_18107	NA	unknown function
UHGV-1323337_41	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-1323337_41	Structural annotation	PF05037	NA	NA
UHGV-1323337_42	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1323337_42	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-1323337_42	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-1323337_42	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1323337_42	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-1323337_43	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1323337_43	PHROG	phrog_11992	NA	unknown function
UHGV-1323337_43	UniRef90	UniRef90_A0A1C6C5D6	DNA primase	NA
UHGV-1323337_43	eggNOG-mapper	608534.GCWU000341_02961	CHC2 zinc finger domain protein	NA
UHGV-1323337_43	PADLOC	drt-cluster192	DRT	DRT
UHGV-1323337_43	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1323337_43	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1323337_43	Structural annotation	PF01807, PF00401	NA	NA
UHGV-1323337_44	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1323337_44	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-1323337_44	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-1323337_44	Pfam	PF06048	NA	DUF927
UHGV-1323337_44	COG	COG5519	NA	NA