UHGV-1333312

Genome information

Genome length 37,402 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-1333312
vOTU ID	vOTU-009781
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413759_NODE_565_length_44646_cov_2.800700
BioSample	SAMN00792104
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.76
Jumbo phage	No

Genome content
Genome length	37,402 bps
GC content	42.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	88.56%
Average CDS length	627.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1333312_1	PHROG	phrog_18996	NA	unknown function
UHGV-1333312_1	eggNOG-mapper	1273103.NM10_01746	NA	NA
UHGV-1333312_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1333312_2	PHROG	phrog_435	endolysin	lysis
UHGV-1333312_2	UniRef90	UniRef90_A0A848BYS6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1333312_2	eggNOG-mapper	1064535.MELS_1119	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1333312_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1333312_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1333312_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1333312_3	eggNOG-mapper	1273103.NM10_01736	NA	NA
UHGV-1333312_4	PHROG	phrog_4105	NA	unknown function
UHGV-1333312_4	eggNOG-mapper	1235790.C805_00613	NA	NA
UHGV-1333312_5	PHROG	phrog_32639	NA	unknown function
UHGV-1333312_5	eggNOG-mapper	568816.Acin_1300	NA	NA
UHGV-1333312_6	KOfam	K14059	int; integrase	NA
UHGV-1333312_6	PHROG	phrog_1	integrase	integration and excision
UHGV-1333312_6	UniRef90	UniRef90_A0A2S0M4J5	Site-specific integrase	NA
UHGV-1333312_6	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-1333312_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1333312_6	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1333312_6	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1333312_9	PHROG	phrog_7037	tail fiber protein	tail
UHGV-1333312_9	UniRef90	UniRef90_UPI000486D8B9	phage tail protein	NA
UHGV-1333312_9	eggNOG-mapper	546273.VEIDISOL_00731	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1333312_9	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-1333312_9	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1333312_9	Structural annotation	PF12571	NA	NA
UHGV-1333312_10	PHROG	phrog_521	tail protein	tail
UHGV-1333312_10	UniRef90	UniRef90_A0A2S0M4L0	NA	NA
UHGV-1333312_10	eggNOG-mapper	1273103.NM10_00994	NA	NA
UHGV-1333312_10	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1333312_10	COG	COG3778	NA	NA
UHGV-1333312_10	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1333312_11	PHROG	phrog_6	baseplate protein	tail
UHGV-1333312_11	UniRef90	UniRef90_A0A2S0M4L2	Baseplate_J domain-containing protein	NA
UHGV-1333312_11	eggNOG-mapper	568816.Acin_1959	Baseplate J-like protein	NA
UHGV-1333312_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1333312_11	COG	COG3299	NA	NA
UHGV-1333312_11	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1333312_12	PHROG	phrog_120	baseplate protein	tail
UHGV-1333312_12	UniRef90	UniRef90_A0A2S0M4I9	NA	NA
UHGV-1333312_12	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-1333312_12	Pfam	PF10934	NA	DUF2634
UHGV-1333312_12	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1333312_12	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1333312_13	PHROG	phrog_579	NA	unknown function
UHGV-1333312_13	UniRef90	UniRef90_A0A2S0M4I6	NA	NA
UHGV-1333312_13	eggNOG-mapper	1123250.KB908414_gene2116	NA	NA
UHGV-1333312_13	Pfam	PF10844	NA	DUF2577
UHGV-1333312_13	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-1333312_14	PHROG	phrog_400	tail protein	tail
UHGV-1333312_14	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-1333312_14	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-1333312_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1333312_14	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-1333312_15	PHROG	phrog_5184	NA	unknown function
UHGV-1333312_15	UniRef90	UniRef90_I0GWS0	Phage related protein	NA
UHGV-1333312_15	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-1333312_15	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1333312_15	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-1333312_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1333312_16	UniRef90	UniRef90_A0A2S0M4J9	Phage tail tape measure protein	NA
UHGV-1333312_16	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-1333312_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1333312_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1333312_16	COG	COG5283	Phage-related tail protein	NA
UHGV-1333312_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1333312_17	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1333312_17	UniRef90	UniRef90_A0A3N1XNY1	XkdN-like tail assembly chaperone	NA
UHGV-1333312_17	eggNOG-mapper	1095750.HMPREF9970_2276	PFAM Phage XkdN-like protein	NA
UHGV-1333312_17	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1333312_17	Structural annotation	PF08890	NA	NA
UHGV-1333312_18	PHROG	phrog_365	tail protein	tail
UHGV-1333312_18	UniRef90	UniRef90_A0A2S0M4K4	Phage portal protein	NA
UHGV-1333312_18	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-1333312_18	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1333312_18	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1333312_19	PHROG	phrog_1480	tail sheath	tail
UHGV-1333312_19	UniRef90	UniRef90_A0A2S0MA33	Phage tail sheath protein	NA
UHGV-1333312_19	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-1333312_19	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1333312_19	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1333312_19	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1333312_20	PHROG	phrog_525	NA	unknown function
UHGV-1333312_20	Pfam	PF20765	NA	DUF6838
UHGV-1333312_20	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1333312_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1333312_21	UniRef90	UniRef90_UPI0019591A25	HK97 gp10 family phage protein	NA
UHGV-1333312_21	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1333312_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1333312_21	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1333312_21	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1333312_22	PHROG	phrog_25	head closure Hc1	connector
UHGV-1333312_22	UniRef90	UniRef90_A0A2S0M4M0	Head-tail adaptor protein	NA
UHGV-1333312_22	eggNOG-mapper	568816.Acin_1341	Phage head-tail joining protein	NA
UHGV-1333312_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1333312_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1333312_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1333312_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1333312_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1333312_23	UniRef90	UniRef90_A0A2S0M4J7	Phage gp6-like head-tail connector protein	NA
UHGV-1333312_23	eggNOG-mapper	910314.HMPREF9220_1093	Phage gp6-like head-tail connector protein	NA
UHGV-1333312_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1333312_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1333312_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1333312_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-1333312_24	UniRef90	UniRef90_A0A2S0M4J6	Phage major capsid protein	NA
UHGV-1333312_24	eggNOG-mapper	679201.HMPREF9334_00322	Phage major capsid protein, HK97 family	NA
UHGV-1333312_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1333312_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1333312_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1333312_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1333312_25	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1333312_25	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1333312_25	UniRef90	UniRef90_A0A2S0M4M2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1333312_25	eggNOG-mapper	679201.HMPREF9334_00321	Belongs to the peptidase S14 family	NA
UHGV-1333312_25	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1333312_25	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1333312_25	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1333312_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-1333312_26	UniRef90	UniRef90_A0A2S0MA31	Phage portal protein	NA
UHGV-1333312_26	eggNOG-mapper	679201.HMPREF9334_00320	Phage portal protein	NA
UHGV-1333312_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1333312_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1333312_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1333312_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1333312_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1333312_27	UniRef90	UniRef90_A0A2S0M4L1	Terminase large subunit	NA
UHGV-1333312_27	eggNOG-mapper	910314.HMPREF9220_1097	Phage Terminase	NA
UHGV-1333312_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1333312_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1333312_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1333312_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1333312_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1333312_28	UniRef90	UniRef90_A0A2S0M4K9	Phage terminase small subunit P27 family	NA
UHGV-1333312_28	eggNOG-mapper	1118057.CAGX01000058_gene91	Phage terminase, small subunit	NA
UHGV-1333312_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1333312_28	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1333312_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1333312_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1333312_29	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1333312_29	UniRef90	UniRef90_A0A2S0M4I8	HNH endonuclease	NA
UHGV-1333312_29	eggNOG-mapper	910314.HMPREF9220_1099	NA	NA
UHGV-1333312_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1333312_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1333312_30	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1333312_31	PHROG	phrog_14517	NA	unknown function
UHGV-1333312_31	UniRef90	UniRef90_A0A0L0MIY5	NA	NA
UHGV-1333312_31	eggNOG-mapper	913865.DOT_5644	NA	NA
UHGV-1333312_31	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-1333312_32	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1333312_32	UniRef90	UniRef90_UPI000930BD90	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1333312_32	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1333312_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1333312_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1333312_33	eggNOG-mapper	1211817.CCAT010000012_gene2727	NA	NA
UHGV-1333312_33	Structural annotation	PF21578	NA	NA
UHGV-1333312_35	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1333312_36	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1333312_36	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1333312_36	UniRef90	UniRef90_J4UR06	DNA methylase family protein	NA
UHGV-1333312_36	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-1333312_36	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-1333312_36	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1333312_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1333312_36	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1333312_36	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-1333312_37	PHROG	phrog_12728	NA	unknown function
UHGV-1333312_37	eggNOG-mapper	742765.HMPREF9457_02125	NA	NA
UHGV-1333312_41	PHROG	phrog_25045	NA	unknown function
UHGV-1333312_41	UniRef90	UniRef90_A0A2S0MA59	LysM domain-containing protein	NA
UHGV-1333312_41	eggNOG-mapper	1111454.HMPREF1250_0025	LysM domain	NA
UHGV-1333312_41	Pfam	PF01476	LysM domain	LysM
UHGV-1333312_41	COG	COG1388	LysM repeat	NA
UHGV-1333312_41	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-1333312_44	PHROG	phrog_16447	NA	unknown function
UHGV-1333312_44	UniRef90	UniRef90_UPI001C0C1EC5	NA	NA
UHGV-1333312_44	eggNOG-mapper	797515.HMPREF9103_02407	NA	NA
UHGV-1333312_44	Pfam	PF10083	NA	DUF2321
UHGV-1333312_44	COG	COG4306	NA	NA
UHGV-1333312_44	Structural annotation	PF10083, COG4306	NA	NA
UHGV-1333312_46	PHROG	phrog_31924	NA	unknown function
UHGV-1333312_50	UniRef90	UniRef90_UPI0008E110CC	helix-turn-helix transcriptional regulator	NA
UHGV-1333312_50	eggNOG-mapper	1540257.JQMW01000013_gene774	NA	NA
UHGV-1333312_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1333312_50	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1333312_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1333312_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1333312_51	UniRef90	UniRef90_UPI0008E976B1	helix-turn-helix domain-containing protein	NA
UHGV-1333312_51	eggNOG-mapper	1120998.AUFC01000030_gene2204	Helix-turn-helix XRE-family like proteins	NA
UHGV-1333312_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1333312_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1333312_52	eggNOG-mapper	592028.GCWU000321_01101	NA	NA
UHGV-1333312_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1333312_53	PHROG	phrog_95	integrase	integration and excision
UHGV-1333312_53	UniRef90	UniRef90_A0A2S0M4L4	Recombinase family protein	NA
UHGV-1333312_53	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-1333312_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1333312_53	Pfam	PF07508	Recombinase	Recombinase
UHGV-1333312_53	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1333312_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1333312_53	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA