UHGV-1333541

Genome information

Genome length 32,877 bps

CDS count 42

Completeness 72.76% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-1333541
vOTU ID	vOTU-032882
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Norman_71_NODE_14_length_32877_cov_17.444184
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.09
Jumbo phage	No

Genome content
Genome length	32,877 bps
GC content	41.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.72%
Average CDS length	728.79 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1333541_1	UniRef90	UniRef90_A0A2N5PB17	NA	NA
UHGV-1333541_1	Structural annotation	NF041588	NA	NA
UHGV-1333541_2	PHROG	phrog_8684	NA	unknown function
UHGV-1333541_2	UniRef90	UniRef90_A0A1Q6KL00	YopX domain-containing protein	NA
UHGV-1333541_2	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-1333541_2	Pfam	PF09643	YopX protein	YopX
UHGV-1333541_2	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1333541_2	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1333541_3	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1333541_3	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1333541_3	UniRef90	UniRef90_A0A8B3BSU1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1333541_3	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-1333541_3	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-1333541_3	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1333541_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1333541_3	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1333541_7	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-1333541_7	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-1333541_7	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-1333541_7	eggNOG-mapper	1121333.JMLH01000003_gene334	PIF1-like helicase	NA
UHGV-1333541_7	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-1333541_7	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-1333541_7	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1333541_8	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1333541_8	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-1333541_8	eggNOG-mapper	658655.HMPREF0988_02581	NA	NA
UHGV-1333541_8	Pfam	PF06048	NA	DUF927
UHGV-1333541_8	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1333541_8	COG	COG5519	NA	NA
UHGV-1333541_8	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1333541_9	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1333541_9	PHROG	phrog_11992	NA	unknown function
UHGV-1333541_9	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-1333541_9	eggNOG-mapper	861454.HMPREF9099_00351	CHC2 zinc finger	NA
UHGV-1333541_9	PADLOC	drt-UG29	DRT	DRT
UHGV-1333541_9	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1333541_9	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1333541_9	Structural annotation	PF01807, PF00401	NA	NA
UHGV-1333541_10	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1333541_10	UniRef90	UniRef90_UPI00156FB923	ERCC4 domain-containing protein	NA
UHGV-1333541_10	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-1333541_10	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-1333541_11	PHROG	phrog_18107	NA	unknown function
UHGV-1333541_11	eggNOG-mapper	397290.C810_05167	NA	NA
UHGV-1333541_11	Structural annotation	PF05037	NA	NA
UHGV-1333541_12	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1333541_12	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-1333541_12	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-1333541_12	Pfam	PF13479	AAA domain	AAA_24
UHGV-1333541_12	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1333541_13	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-1333541_19	UniRef90	UniRef90_A0A0V8QBN7	Histone-lysine N-methyltransferase	NA
UHGV-1333541_19	eggNOG-mapper	658088.HMPREF0987_00666	NA	NA
UHGV-1333541_19	Structural annotation	PF12728, NF040990	NA	NA
UHGV-1333541_20	PHROG	phrog_28292	NA	unknown function
UHGV-1333541_20	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-1333541_20	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-1333541_21	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1333541_21	UniRef90	UniRef90_UPI001F33991D	Rha family transcriptional regulator	NA
UHGV-1333541_21	eggNOG-mapper	478749.BRYFOR_07645	Phage regulatory protein	NA
UHGV-1333541_21	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1333541_21	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1333541_22	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1333541_22	UniRef90	UniRef90_UPI00046409A2	helix-turn-helix domain-containing protein	NA
UHGV-1333541_22	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-1333541_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1333541_22	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-1333541_23	PHROG	phrog_87	metallo-protease	other
UHGV-1333541_23	UniRef90	UniRef90_A0A373INP4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1333541_23	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-1333541_23	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1333541_23	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1333541_23	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1333541_25	KOfam	K14059	int; integrase	NA
UHGV-1333541_25	PHROG	phrog_1	integrase	integration and excision
UHGV-1333541_25	UniRef90	UniRef90_UPI00191722F2	site-specific integrase	NA
UHGV-1333541_25	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1333541_25	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1333541_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1333541_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1333541_25	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1333541_26	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1333541_26	PHROG	phrog_435	endolysin	lysis
UHGV-1333541_26	UniRef90	UniRef90_A0A6N2RSZ1	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-1333541_26	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1333541_26	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1333541_26	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1333541_26	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1333541_26	Structural annotation	PF01832, NF008758, NF009354, COG5632, COG4193	NA	NA
UHGV-1333541_27	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1333541_27	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1333541_27	UniRef90	UniRef90_A0A2Z4UD85	Bro-N domain-containing protein	NA
UHGV-1333541_27	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-1333541_27	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1333541_27	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1333541_27	COG	COG3617	Prophage antirepressor	NA
UHGV-1333541_27	Structural annotation	PF03374, PF02498, TIGR02681, COG3617	NA	NA
UHGV-1333541_28	PHROG	phrog_1129	holin	lysis
UHGV-1333541_28	UniRef90	UniRef90_UPI001C01C03F	phage holin family protein	NA
UHGV-1333541_28	eggNOG-mapper	1235798.C817_03464	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1333541_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1333541_28	Structural annotation	PF06946	NA	NA
UHGV-1333541_29	PHROG	phrog_4105	NA	unknown function
UHGV-1333541_29	eggNOG-mapper	1235790.C805_00613	NA	NA
UHGV-1333541_30	PHROG	phrog_18444	NA	unknown function
UHGV-1333541_30	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-1333541_31	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1333541_31	PHROG	phrog_13289	tail protein	tail
UHGV-1333541_31	UniRef90	UniRef90_UPI000CDA202F	phage tail protein	NA
UHGV-1333541_31	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-1333541_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1333541_31	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1333541_31	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-1333541_31	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-1333541_31	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1333541_31	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-1333541_32	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1333541_32	UniRef90	UniRef90_UPI001570C170	phage tail protein	NA
UHGV-1333541_32	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-1333541_32	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1333541_32	COG	COG4722	Phage-related protein YomH	NA
UHGV-1333541_32	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1333541_33	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1333541_33	UniRef90	UniRef90_A0A371IJP1	Phage tail tape measure protein	NA
UHGV-1333541_33	eggNOG-mapper	1443125.Z962_p0064	phage tail tape measure protein	NA
UHGV-1333541_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1333541_33	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1333541_33	COG	COG1340	NA	NA
UHGV-1333541_33	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1333541_35	PHROG	phrog_88	major tail protein	tail
UHGV-1333541_35	UniRef90	UniRef90_A0A416ZS16	Phage tail protein	NA
UHGV-1333541_35	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1333541_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1333541_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1333541_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1333541_36	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-1333541_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1333541_36	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1333541_36	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1333541_37	Structural annotation	PF05657	NA	NA
UHGV-1333541_38	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-1333541_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1333541_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-1333541_40	UniRef90	UniRef90_A0A3E3JY53	Phage major capsid protein	NA
UHGV-1333541_40	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1333541_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1333541_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1333541_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1333541_40	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1333541_41	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1333541_41	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1333541_41	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-1333541_41	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1333541_41	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1333541_41	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1333541_41	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1333541_42	UniRef90	UniRef90_UPI000AE2521F	phage portal protein	NA
UHGV-1333541_42	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1333541_42	COG	COG4695	Phage portal protein BeeE	NA