UHGV-1334293

Genome information

Genome length 38,739 bps

CDS count 47

Completeness 99.61% (high-quality)

geNomad score 0.9720

Prediction confidence Confident

Genome information
Genome ID	UHGV-1334293
vOTU ID	vOTU-009784
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413647_NODE_392_length_38739_cov_10.265950
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9720
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	99.67
Jumbo phage	No

Genome content
Genome length	38,739 bps
GC content	41.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.74%
Average CDS length	760.47 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1334293_1	KOfam	K14059	int; integrase	NA
UHGV-1334293_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1334293_1	UniRef90	UniRef90_E4LAC6	Site-specific recombinase, phage integrase family	NA
UHGV-1334293_1	eggNOG-mapper	910314.HMPREF9220_0756	Belongs to the 'phage' integrase family	NA
UHGV-1334293_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1334293_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1334293_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1334293_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1334293_2	Pfam	PF19839	Ribbon-helix-helix protein	RHH_9
UHGV-1334293_3	PHROG	phrog_5162	NA	unknown function
UHGV-1334293_3	eggNOG-mapper	1123058.KB894242_gene932	NA	NA
UHGV-1334293_4	PHROG	phrog_21575	NA	unknown function
UHGV-1334293_7	KOfam	K21313	1; T7 RNA polymerase [EC:2.7.7.6]	NA
UHGV-1334293_7	PHROG	phrog_414	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1334293_7	UniRef90	UniRef90_E4LAB3	DNA-directed RNA polymerase	NA
UHGV-1334293_7	eggNOG-mapper	910314.HMPREF9220_0743	dna-directed rna polymerase	NA
UHGV-1334293_7	Pfam	PF00940	DNA-dependent RNA polymerase	RNA_pol
UHGV-1334293_7	COG	COG5108	Mitochondrial DNA-directed RNA polymerase	NA
UHGV-1334293_7	Structural annotation	PF00940, PF14700, NF011539, COG5108	NA	NA
UHGV-1334293_10	PHROG	phrog_21026	NA	unknown function
UHGV-1334293_10	eggNOG-mapper	526218.Sterm_0798	NA	NA
UHGV-1334293_15	PHROG	phrog_10602	nucleotide kinase	other
UHGV-1334293_15	UniRef90	UniRef90_A0A413R0M9	NA	NA
UHGV-1334293_15	eggNOG-mapper	1432658.V5UQP0_9CAUD	NA	NA
UHGV-1334293_15	Pfam	PF11753	NA	DUF3310
UHGV-1334293_15	Structural annotation	PF11753	NA	NA
UHGV-1334293_17	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1334293_17	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1334293_17	UniRef90	UniRef90_A0A1M6MEY3	dUTP pyrophosphatase	NA
UHGV-1334293_17	eggNOG-mapper	203124.Tery_2083	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1334293_17	Pfam	PF00692	dUTPase	dUTPase
UHGV-1334293_17	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1334293_18	KOfam	K25280	gp2.5, ssb; T7 single-stranded DNA-binding protein	NA
UHGV-1334293_18	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1334293_18	UniRef90	UniRef90_UPI0010327CA7	NA	NA
UHGV-1334293_18	eggNOG-mapper	910314.HMPREF9220_0740	NA	NA
UHGV-1334293_18	Pfam	PF21265	Single-stranded DNA-binding protein, Bacteriophage T7	SBB_T7
UHGV-1334293_18	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-1334293_19	KOfam	K21525	Gp3; endonuclease I [EC:3.1.21.2]	NA
UHGV-1334293_19	PHROG	phrog_945	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1334293_19	UniRef90	UniRef90_A0A2Z2U7X4	Endonuclease-like protein	NA
UHGV-1334293_19	eggNOG-mapper	913183.E5RV06_9CAUD	deoxyribonuclease IV (phage-T4-induced) activity	NA
UHGV-1334293_19	Pfam	PF05367	Phage endonuclease I	Phage_endo_I
UHGV-1334293_19	Structural annotation	PF05367, COG1787	NA	NA
UHGV-1334293_20	UniRef90	UniRef90_E4LAA8	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1334293_20	Structural annotation	PF01510, MF_04111	NA	NA
UHGV-1334293_21	KOfam	K21502	Gp4; DNA primase/helicase [EC:2.7.7.- 5.6.2.3]	NA
UHGV-1334293_21	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1334293_21	UniRef90	UniRef90_E4LAA7	Toprim domain protein	NA
UHGV-1334293_21	eggNOG-mapper	910314.HMPREF9220_0737	DNA primase activity	NA
UHGV-1334293_21	Pfam	PF21268	Bacteriophage T7 DNA helicase/primase, N-terminal a+b fold	Helic-prim_T7_N
UHGV-1334293_21	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1334293_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1334293_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-1334293_21	HAMAP	MF_04154	DNA helicase/primase [4]	NA
UHGV-1334293_21	Structural annotation	PF03796, PF21268, MF_04154, NF005424, TIGR01391, COG0305	NA	NA
UHGV-1334293_22	KOfam	K21238	Gp5; T7 DNA-directed DNA polymerase [EC:2.7.7.7]	NA
UHGV-1334293_22	PHROG	phrog_15971	DNA polymerase I	DNA, RNA and nucleotide metabolism
UHGV-1334293_22	UniRef90	UniRef90_A0A1M6MFE6	DNA-directed DNA polymerase	NA
UHGV-1334293_22	eggNOG-mapper	910314.HMPREF9220_0734	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-1334293_22	Pfam	PF13482	RNase_H superfamily	RNase_H_2
UHGV-1334293_22	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1334293_22	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1334293_22	Structural annotation	PF00476, PF13482, MF_04101, NF004397, COG0749	NA	NA
UHGV-1334293_23	Pfam	PF18129	Xrn1 SH3-like domain	SH3_12
UHGV-1334293_23	Structural annotation	PF18129, MF_00613, NF002745, COG2139	NA	NA
UHGV-1334293_24	PHROG	phrog_1334	NA	unknown function
UHGV-1334293_24	Structural annotation	PF21715	NA	NA
UHGV-1334293_25	KOfam	K23786	exoA; 5'-3' exonuclease [EC:3.1.11.-]	NA
UHGV-1334293_25	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-1334293_25	UniRef90	UniRef90_E4LAA3	Putative Exodeoxyribonuclease	NA
UHGV-1334293_25	eggNOG-mapper	910314.HMPREF9220_0733	nuclease activity	NA
UHGV-1334293_25	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-1334293_25	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-1334293_25	Structural annotation	PF02739, MF_04140, NF011544, COG0258	NA	NA
UHGV-1334293_26	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1334293_26	Structural annotation	PF09390, MF_01127, NF041716, COG0456	NA	NA
UHGV-1334293_27	Structural annotation	PF10911	NA	NA
UHGV-1334293_28	Pfam	PF17570	Bacteriophage T7-like, protein 6.7	T7-like_gp67
UHGV-1334293_29	PHROG	phrog_1320	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-1334293_30	PHROG	phrog_449	head-tail adaptor	connector
UHGV-1334293_30	UniRef90	UniRef90_E4LA99	Head-to-tail joining protein	NA
UHGV-1334293_30	eggNOG-mapper	910314.HMPREF9220_0729	Bacteriophage head to tail connecting protein	NA
UHGV-1334293_30	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1334293_30	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1334293_31	PHROG	phrog_1052	head assembly	head and packaging
UHGV-1334293_31	UniRef90	UniRef90_E4LA98	Phage T7 capsid assembly protein	NA
UHGV-1334293_31	eggNOG-mapper	910314.HMPREF9220_0728	Phage T7 capsid assembly protein	NA
UHGV-1334293_31	Pfam	PF05396	Phage T7 capsid assembly protein	Phage_T7_Capsid
UHGV-1334293_31	Structural annotation	PF05396	NA	NA
UHGV-1334293_32	PHROG	phrog_267	major head protein	head and packaging
UHGV-1334293_32	UniRef90	UniRef90_UPI001032B69C	phage capsid protein	NA
UHGV-1334293_32	eggNOG-mapper	910314.HMPREF9220_0727	NA	NA
UHGV-1334293_32	Pfam	PF21703	Major capsid protein	Gp10A-like
UHGV-1334293_32	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1334293_33	PHROG	phrog_446	tail protein	tail
UHGV-1334293_33	UniRef90	UniRef90_UPI001032D6E0	phage tail protein	NA
UHGV-1334293_33	eggNOG-mapper	910314.HMPREF9220_0726	Tail tubular protein	NA
UHGV-1334293_33	Pfam	PF17212	Tail tubular protein	Tube
UHGV-1334293_33	Structural annotation	PF17212	NA	NA
UHGV-1334293_34	PHROG	phrog_457	tail protein	tail
UHGV-1334293_34	UniRef90	UniRef90_F1D037	Tail tubular protein B	NA
UHGV-1334293_34	eggNOG-mapper	910314.HMPREF9220_0725	NA	NA
UHGV-1334293_34	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-1334293_35	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-1334293_35	eggNOG-mapper	344021.Q3YJW8_BPK1F	NA	NA
UHGV-1334293_35	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-1334293_35	Structural annotation	PF13420, MF_02210, NF040504, COG0456	NA	NA
UHGV-1334293_36	PHROG	phrog_805	internal virion protein	head and packaging
UHGV-1334293_36	eggNOG-mapper	1262914.BN533_00636	NA	NA
UHGV-1334293_37	eggNOG-mapper	1262914.BN533_00637	NA	NA
UHGV-1334293_37	Structural annotation	MF_04122	NA	NA
UHGV-1334293_38	PHROG	phrog_342	internal virion protein with endolysin domain	head and packaging
UHGV-1334293_38	UniRef90	UniRef90_A0A1M6MGY6	Phage_lysozyme2 domain-containing protein	NA
UHGV-1334293_38	eggNOG-mapper	910314.HMPREF9220_0721	NA	NA
UHGV-1334293_38	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1334293_38	Structural annotation	MF_04121, NF038016, COG1705	NA	NA
UHGV-1334293_40	PHROG	phrog_6256	tail fiber protein	tail
UHGV-1334293_40	eggNOG-mapper	910314.HMPREF9220_0720	Phage T7 tail fibre protein	NA
UHGV-1334293_40	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-1334293_40	Structural annotation	PF03906, COG5448	NA	NA
UHGV-1334293_42	PHROG	phrog_920	holin	lysis
UHGV-1334293_42	UniRef90	UniRef90_A0A4P6DDX8	Holin	NA
UHGV-1334293_42	eggNOG-mapper	1542498.A0A088FT74_9CAUD	Pfam:Phage_holin_2_2	NA
UHGV-1334293_42	Pfam	PF10746	Phage holin T7 family, holin superfamily II	Phage_holin_2_2
UHGV-1334293_42	Structural annotation	PF10746, MF_04108	NA	NA
UHGV-1334293_43	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-1334293_43	PHROG	phrog_3513	endolysin	lysis
UHGV-1334293_43	UniRef90	UniRef90_E4LA87	Putative muramidase-2	NA
UHGV-1334293_43	eggNOG-mapper	910314.HMPREF9220_0717	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1334293_43	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1334293_43	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-1334293_43	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-1334293_45	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1334293_45	UniRef90	UniRef90_UPI0018D58E1D	phage terminase large subunit	NA
UHGV-1334293_45	eggNOG-mapper	910314.HMPREF9220_0713	chromosome segregation	NA
UHGV-1334293_45	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-1334293_45	COG	COG5410	NA	NA
UHGV-1334293_45	HAMAP	MF_04147	Terminase, large subunit	NA
UHGV-1334293_45	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5323	NA	NA
UHGV-1334293_47	Structural annotation	PF03895	NA	NA