UHGV-1334610

Genome information

vOTU vOTU-020705

Genome length 28,815 bps

CDS count 39

Completeness 84.74% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-1334610
vOTU ID	vOTU-020705
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Norman_4_NODE_7_length_28815_cov_12.898505
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.26
Jumbo phage	No

Genome content
Genome length	28,815 bps
GC content	38.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	90.49%
Average CDS length	672.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1334610_1	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1334610_1	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-1334610_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1334610_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1334610_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1334610_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1334610_2	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-1334610_2	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-1334610_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1334610_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1334610_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1334610_2	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1334610_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1334610_3	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-1334610_3	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-1334610_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1334610_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1334610_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1334610_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1334610_4	KOfam	K06904	NA	NA
UHGV-1334610_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1334610_4	UniRef90	UniRef90_A0A134AET7	Phage prohead protease, HK97 family	NA
UHGV-1334610_4	eggNOG-mapper	1121423.JONT01000041_gene945	Phage prohead protease, HK97 family	NA
UHGV-1334610_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1334610_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1334610_4	COG	COG3740	Phage head maturation protease	NA
UHGV-1334610_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1334610_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1334610_5	UniRef90	UniRef90_A0A1Y4R494	Phage major capsid protein	NA
UHGV-1334610_5	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-1334610_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1334610_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1334610_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1334610_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1334610_5	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1334610_6	PHROG	phrog_2550	NA	unknown function
UHGV-1334610_6	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-1334610_6	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-1334610_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1334610_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1334610_7	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-1334610_7	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-1334610_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1334610_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1334610_8	UniRef90	UniRef90_A0A8J6PH82	HK97 gp10 family phage protein	NA
UHGV-1334610_8	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-1334610_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1334610_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1334610_9	PHROG	phrog_78	tail terminator	connector
UHGV-1334610_9	UniRef90	UniRef90_A6XMK2	Aminopeptidase	NA
UHGV-1334610_9	eggNOG-mapper	471875.RUMLAC_02244	NA	NA
UHGV-1334610_9	Structural annotation	PF20765	NA	NA
UHGV-1334610_10	PHROG	phrog_88	major tail protein	tail
UHGV-1334610_10	UniRef90	UniRef90_R9N908	Phi13 family phage major tail protein	NA
UHGV-1334610_10	eggNOG-mapper	1235798.C817_02573	phage major tail protein, phi13 family	NA
UHGV-1334610_10	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1334610_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1334610_10	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-1334610_11	PHROG	phrog_709	NA	unknown function
UHGV-1334610_11	eggNOG-mapper	1410624.JNKK01000017_gene1983	NA	NA
UHGV-1334610_11	Structural annotation	PF11836	NA	NA
UHGV-1334610_12	PHROG	phrog_3033	NA	unknown function
UHGV-1334610_12	UniRef90	UniRef90_A0A174UN01	Phage-like protein	NA
UHGV-1334610_12	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-1334610_13	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-1334610_13	UniRef90	UniRef90_UPI000C7C3162	phage tail tape measure protein	NA
UHGV-1334610_13	eggNOG-mapper	1487921.DP68_11365	tail tape measure protein	NA
UHGV-1334610_13	COG	COG1511	NA	NA
UHGV-1334610_13	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-1334610_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1334610_14	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-1334610_14	eggNOG-mapper	1497679.EP56_07715	tail component	NA
UHGV-1334610_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-1334610_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1334610_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1334610_15	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-1334610_15	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1334610_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1334610_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1334610_15	COG	COG4926	Phage-related protein	NA
UHGV-1334610_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1334610_16	PHROG	phrog_24267	NA	unknown function
UHGV-1334610_16	UniRef90	UniRef90_A0A412AXT4	NA	NA
UHGV-1334610_16	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-1334610_16	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1334610_16	COG	COG4675	Phage tail collar domain	NA
UHGV-1334610_16	Structural annotation	PF10651, NF040788, COG2372	NA	NA
UHGV-1334610_18	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1334610_18	PHROG	phrog_7698	endolysin	lysis
UHGV-1334610_18	UniRef90	UniRef90_UPI0009861559	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1334610_18	eggNOG-mapper	293826.Amet_2548	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1334610_18	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1334610_18	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1334610_18	Structural annotation	PF01510, PF18342, PF08239, MF_04111, NF040670, NF008758, COG5632	NA	NA
UHGV-1334610_20	PHROG	phrog_1129	holin	lysis
UHGV-1334610_20	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-1334610_20	eggNOG-mapper	537013.CLOSTMETH_01754	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1334610_20	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1334610_20	Structural annotation	PF16079	NA	NA
UHGV-1334610_21	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-1334610_21	UniRef90	UniRef90_UPI0018980930	Abi family protein	NA
UHGV-1334610_21	eggNOG-mapper	511680.BUTYVIB_01292	Abi-like protein	NA
UHGV-1334610_21	PADLOC	AbiD	AbiD	Abi
UHGV-1334610_21	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-1334610_21	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-1334610_21	Structural annotation	PF07751, COG4823	NA	NA
UHGV-1334610_23	UniRef90	UniRef90_U2CXQ8	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-1334610_23	eggNOG-mapper	203119.Cthe_1750	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1334610_23	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1334610_23	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-1334610_25	UniRef90	UniRef90_A0A1C6CDR6	HTH cro/C1-type domain-containing protein	NA
UHGV-1334610_26	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1334610_26	PHROG	phrog_95	integrase	integration and excision
UHGV-1334610_26	UniRef90	UniRef90_UPI001C63F9A1	recombinase family protein	NA
UHGV-1334610_26	eggNOG-mapper	645991.Sgly_0308	Resolvase, N terminal domain	NA
UHGV-1334610_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1334610_26	Pfam	PF07508	Recombinase	Recombinase
UHGV-1334610_26	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1334610_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1334610_26	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1334610_27	UniRef90	UniRef90_A0A1H9TD14	NA	NA
UHGV-1334610_27	eggNOG-mapper	1158609.I586_00781	NA	NA
UHGV-1334610_27	Pfam	PF16729	NA	DUF5067
UHGV-1334610_27	Structural annotation	PF16729, MF_00791, TIGR04087, COG2967	NA	NA
UHGV-1334610_29	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1334610_29	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1334610_29	UniRef90	UniRef90_A0A6N9PW26	LexA family transcriptional regulator	NA
UHGV-1334610_29	eggNOG-mapper	1232446.BAIE02000002_gene795	NA	NA
UHGV-1334610_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1334610_29	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1334610_29	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1334610_29	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-1334610_32	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-1334610_32	PHROG	phrog_359	DNA methyltransferase	other
UHGV-1334610_32	UniRef90	UniRef90_UPI000E09A8FA	MT-A70 family methyltransferase	NA
UHGV-1334610_32	eggNOG-mapper	1462527.CCDM010000006_gene4447	Belongs to the MT-A70-like family	NA
UHGV-1334610_32	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-1334610_32	Pfam	PF05063	MT-A70	MT-A70
UHGV-1334610_32	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-1334610_32	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-1334610_33	eggNOG-mapper	526218.Sterm_0798	NA	NA
UHGV-1334610_35	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1334610_35	UniRef90	UniRef90_A0A316RHU5	ATP-binding protein	NA
UHGV-1334610_35	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-1334610_35	Pfam	PF13479	AAA domain	AAA_24
UHGV-1334610_35	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1334610_36	PHROG	phrog_18107	NA	unknown function
UHGV-1334610_36	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-1334610_36	Structural annotation	PF05037	NA	NA
UHGV-1334610_37	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1334610_37	UniRef90	UniRef90_A0A0M2NJW5	NA	NA
UHGV-1334610_37	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-1334610_37	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1334610_37	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-1334610_37	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-1334610_38	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1334610_38	PHROG	phrog_11992	NA	unknown function
UHGV-1334610_38	UniRef90	UniRef90_A0A2U1BEF8	CHC2-type zinc finger protein	NA
UHGV-1334610_38	eggNOG-mapper	641112.ACOK01000098_gene250	CHC2 zinc finger	NA
UHGV-1334610_38	PADLOC	drt-UG29	DRT	DRT
UHGV-1334610_38	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1334610_38	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1334610_38	Structural annotation	PF01807, PF00401	NA	NA
UHGV-1334610_39	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1334610_39	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-1334610_39	eggNOG-mapper	1007096.BAGW01000023_gene149	NA	NA
UHGV-1334610_39	Pfam	PF06048	NA	DUF927
UHGV-1334610_39	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1334610_39	COG	COG5519	NA	NA
UHGV-1334610_39	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA