UHGV-1335268

Genome information

Genome length 26,693 bps

CDS count 42

Completeness 75.12% (medium-quality)

geNomad score 0.9692

Prediction confidence Confident

Genome information
Genome ID	UHGV-1335268
vOTU ID	vOTU-033602
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413572_NODE_483_length_26693_cov_11.168444
BioSample	SAMN00791917
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9692
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.34
Jumbo phage	No

Genome content
Genome length	26,693 bps
GC content	32.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.71%
Average CDS length	594.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1335268_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1335268_3	UniRef90	UniRef90_A0A412CHD7	NA	NA
UHGV-1335268_3	eggNOG-mapper	927704.SELR_11170	DNA-templated transcription, initiation	NA
UHGV-1335268_3	Pfam	PF07374	NA	DUF1492
UHGV-1335268_3	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1335268_3	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-1335268_6	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1335268_6	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1335268_6	UniRef90	UniRef90_A0A412CHN3	HNH endonuclease	NA
UHGV-1335268_6	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-1335268_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1335268_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1335268_7	PHROG	phrog_1066	NA	unknown function
UHGV-1335268_7	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-1335268_7	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1335268_8	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1335268_8	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-1335268_8	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-1335268_8	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1335268_8	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1335268_8	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1335268_8	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1335268_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-1335268_9	UniRef90	UniRef90_UPI00142FCB51	phage portal protein	NA
UHGV-1335268_9	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-1335268_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1335268_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1335268_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1335268_10	KOfam	K06904	NA	NA
UHGV-1335268_10	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1335268_10	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-1335268_10	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-1335268_10	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1335268_10	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1335268_10	COG	COG3740	Phage head maturation protease	NA
UHGV-1335268_10	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1335268_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-1335268_11	UniRef90	UniRef90_A0A412CI12	Phage major capsid protein	NA
UHGV-1335268_11	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-1335268_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1335268_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1335268_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1335268_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1335268_12	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-1335268_12	UniRef90	UniRef90_A0A412CHG4	Collagen-like protein	NA
UHGV-1335268_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1335268_13	UniRef90	UniRef90_A0A412CHC9	Phage gp6-like head-tail connector protein	NA
UHGV-1335268_13	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-1335268_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1335268_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1335268_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1335268_14	PHROG	phrog_25	head closure Hc1	connector
UHGV-1335268_14	UniRef90	UniRef90_UPI001CD5F5A7	phage head closure protein	NA
UHGV-1335268_14	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-1335268_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1335268_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1335268_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1335268_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1335268_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1335268_15	UniRef90	UniRef90_A0A412CI38	HK97 gp10 family phage protein	NA
UHGV-1335268_15	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1335268_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1335268_15	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1335268_16	PHROG	phrog_525	NA	unknown function
UHGV-1335268_16	Pfam	PF20765	NA	DUF6838
UHGV-1335268_16	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1335268_17	PHROG	phrog_1480	tail sheath	tail
UHGV-1335268_17	UniRef90	UniRef90_A0A412CH32	Phage tail sheath protein	NA
UHGV-1335268_17	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-1335268_17	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1335268_17	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1335268_19	PHROG	phrog_365	tail protein	tail
UHGV-1335268_19	UniRef90	UniRef90_A0A412CHD4	Phage portal protein	NA
UHGV-1335268_19	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-1335268_19	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1335268_19	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1335268_20	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1335268_20	UniRef90	UniRef90_A0A7Y2PM55	XkdN-like protein	NA
UHGV-1335268_20	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1335268_20	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1335268_20	Structural annotation	PF08890	NA	NA
UHGV-1335268_21	PHROG	phrog_2722	NA	unknown function
UHGV-1335268_22	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1335268_22	UniRef90	UniRef90_A0A412CHP1	Phage tail tape measure protein	NA
UHGV-1335268_22	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-1335268_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1335268_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1335268_22	COG	COG5283	Phage-related tail protein	NA
UHGV-1335268_22	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1335268_23	PHROG	phrog_5184	NA	unknown function
UHGV-1335268_23	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-1335268_23	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-1335268_23	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-1335268_23	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1335268_23	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-1335268_24	PHROG	phrog_400	tail protein	tail
UHGV-1335268_24	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-1335268_24	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-1335268_24	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1335268_24	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-1335268_25	PHROG	phrog_579	NA	unknown function
UHGV-1335268_25	UniRef90	UniRef90_A0A412CHC2	NA	NA
UHGV-1335268_25	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-1335268_25	Pfam	PF10844	NA	DUF2577
UHGV-1335268_25	Structural annotation	PF10844	NA	NA
UHGV-1335268_26	PHROG	phrog_120	baseplate protein	tail
UHGV-1335268_26	UniRef90	UniRef90_A0A412CHX1	NA	NA
UHGV-1335268_26	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-1335268_26	Pfam	PF10934	NA	DUF2634
UHGV-1335268_26	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1335268_26	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1335268_27	PHROG	phrog_6	baseplate protein	tail
UHGV-1335268_27	UniRef90	UniRef90_UPI001D09317C	baseplate J/gp47 family protein	NA
UHGV-1335268_27	eggNOG-mapper	568816.Acin_1959	Baseplate J-like protein	NA
UHGV-1335268_27	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1335268_27	COG	COG3299	NA	NA
UHGV-1335268_27	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1335268_28	PHROG	phrog_521	tail protein	tail
UHGV-1335268_28	UniRef90	UniRef90_UPI001D081220	YmfQ family protein	NA
UHGV-1335268_28	eggNOG-mapper	568816.Acin_1327	NA	NA
UHGV-1335268_28	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1335268_28	COG	COG3778	NA	NA
UHGV-1335268_28	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1335268_29	eggNOG-mapper	1122918.KB907250_gene3597	Phage tail-collar fibre protein	NA
UHGV-1335268_29	Structural annotation	PF12571	NA	NA
UHGV-1335268_30	PHROG	phrog_18608	NA	unknown function
UHGV-1335268_30	eggNOG-mapper	1536772.R70723_29220	ATPase involved in DNA repair	NA
UHGV-1335268_30	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1335268_30	Structural annotation	PF18463, NF012201	NA	NA
UHGV-1335268_36	eggNOG-mapper	1200557.JHWV01000001_gene254	NA	NA
UHGV-1335268_38	KOfam	K14059	int; integrase	NA
UHGV-1335268_38	PHROG	phrog_1	integrase	integration and excision
UHGV-1335268_38	UniRef90	UniRef90_H3K6Q3	Core-binding (CB) domain-containing protein (Fragment)	NA
UHGV-1335268_38	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-1335268_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1335268_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1335268_38	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1335268_39	PHROG	phrog_4105	NA	unknown function
UHGV-1335268_39	eggNOG-mapper	543734.LCABL_13450	NA	NA
UHGV-1335268_40	eggNOG-mapper	568816.Acin_1951	NA	NA
UHGV-1335268_41	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1335268_41	PHROG	phrog_435	endolysin	lysis
UHGV-1335268_41	UniRef90	UniRef90_H3K6Q0	MurNAc-LAA domain-containing protein	NA
UHGV-1335268_41	eggNOG-mapper	591001.Acfer_1125	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1335268_41	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1335268_41	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1335268_41	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA