UHGV-1335298

Genome information

vOTU vOTU-020845

Genome length 21,821 bps

CDS count 36

Completeness 55.13% (medium-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-1335298
vOTU ID	vOTU-020845
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341695_NODE_328_length_34458_cov_4.197512
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.37
Jumbo phage	No

Genome content
Genome length	21,821 bps
GC content	40.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	87.13%
Average CDS length	532.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1335298_1	PHROG	phrog_28808	NA	unknown function
UHGV-1335298_3	PHROG	phrog_87	metallo-protease	other
UHGV-1335298_3	UniRef90	UniRef90_UPI00093BA5F7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1335298_3	eggNOG-mapper	1095737.HMPREF1110_1192	Zn peptidase	NA
UHGV-1335298_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1335298_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1335298_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1335298_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1335298_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1335298_4	UniRef90	UniRef90_A0A448A8C2	Prophage LambdaSa03, transcriptional regulator,Cro/CI family	NA
UHGV-1335298_4	eggNOG-mapper	85154.O34035_BPO12	sequence-specific DNA binding	NA
UHGV-1335298_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1335298_4	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-1335298_5	UniRef90	UniRef90_A0A8B4HXZ0	Prophage pi2 protein 05	NA
UHGV-1335298_5	eggNOG-mapper	646413.C5IUM3_9CAUD	NA	NA
UHGV-1335298_5	Pfam	PF05339	NA	DUF739
UHGV-1335298_5	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-1335298_7	PHROG	phrog_1733	NA	unknown function
UHGV-1335298_7	UniRef90	UniRef90_UPI00189B2560	CT583 family protein	NA
UHGV-1335298_7	eggNOG-mapper	1123302.KB904161_gene1167	NA	NA
UHGV-1335298_7	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1335298_8	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1335298_8	UniRef90	UniRef90_A0A2C5WEE2	ORF6C domain-containing protein	NA
UHGV-1335298_8	eggNOG-mapper	866895.HBHAL_1626	ORF6C domain	NA
UHGV-1335298_8	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1335298_8	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1335298_11	PHROG	phrog_904	excisionase	integration and excision
UHGV-1335298_11	UniRef90	UniRef90_A0A0E2Q2P3	Excisionase	NA
UHGV-1335298_11	eggNOG-mapper	1069533.Sinf_0769	NA	NA
UHGV-1335298_11	Structural annotation	PF20063	NA	NA
UHGV-1335298_12	UniRef90	UniRef90_UPI001BDA165C	Ig-like domain-containing protein	NA
UHGV-1335298_12	eggNOG-mapper	435842.HMPREF0848_00198	Pilin isopeptide linkage domain protein	NA
UHGV-1335298_12	Pfam	PF17961	Bacterial Ig domain	Big_8
UHGV-1335298_12	Pfam	PF05737	Collagen binding domain	Collagen_bind
UHGV-1335298_12	NCBIFam	TIGR01167.1	LPXTG cell wall anchor domain-containing protein	NA
UHGV-1335298_12	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-1335298_12	Structural annotation	PF05737, PF17961, NF000535	NA	NA
UHGV-1335298_13	KOfam	K15352	pipB2; secreted effector protein PipB2	NA
UHGV-1335298_13	PHROG	phrog_923	NA	unknown function
UHGV-1335298_13	eggNOG-mapper	330396.A8ATE4_9CAUD	Pentapeptide repeats (8 copies)	NA
UHGV-1335298_13	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1335298_13	Structural annotation	PF13599, NF011744	NA	NA
UHGV-1335298_14	PHROG	phrog_2486	NA	unknown function
UHGV-1335298_14	UniRef90	UniRef90_A0A380JW97	NA	NA
UHGV-1335298_15	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1335298_15	PHROG	phrog_29927	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1335298_15	UniRef90	UniRef90_A0A6A8UBF6	DnaD domain protein	NA
UHGV-1335298_15	eggNOG-mapper	1123299.AUKZ01000018_gene209	Replication initiation and membrane attachment	NA
UHGV-1335298_15	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1335298_15	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1335298_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1335298_15	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-1335298_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1335298_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1335298_16	UniRef90	UniRef90_UPI0012BCA012	ATP-binding protein	NA
UHGV-1335298_16	eggNOG-mapper	73422.L0P359_9CAUD	IstB-like ATP binding protein	NA
UHGV-1335298_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1335298_16	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-1335298_17	PHROG	phrog_3159	NA	unknown function
UHGV-1335298_17	UniRef90	UniRef90_Q9MCM5	ORF6a	NA
UHGV-1335298_19	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1335298_19	UniRef90	UniRef90_A0A6A8UFS8	Phage recombination protein Bet	NA
UHGV-1335298_19	eggNOG-mapper	1289598.M1PFN1_9CAUD	DNA metabolic process	NA
UHGV-1335298_19	Pfam	PF03837	RecT family	RecT
UHGV-1335298_19	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1335298_19	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1335298_20	PHROG	phrog_674	NA	unknown function
UHGV-1335298_20	UniRef90	UniRef90_A0A412AB56	NA	NA
UHGV-1335298_20	eggNOG-mapper	1035189.HMPREF9954_0291	NA	NA
UHGV-1335298_20	Pfam	PF07083	NA	DUF1351
UHGV-1335298_20	Structural annotation	PF07083	NA	NA
UHGV-1335298_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1335298_21	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1335298_21	UniRef90	UniRef90_A0A191KC42	Endodeoxyribonuclease RusA	NA
UHGV-1335298_21	eggNOG-mapper	1123318.KB904586_gene519	NA	NA
UHGV-1335298_21	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1335298_22	PHROG	phrog_1489	NA	unknown function
UHGV-1335298_22	UniRef90	UniRef90_Q9MCL8	ORF12	NA
UHGV-1335298_22	Structural annotation	PF13773	NA	NA
UHGV-1335298_24	PHROG	phrog_121	NA	unknown function
UHGV-1335298_24	UniRef90	UniRef90_UPI0012BB4C26	NA	NA
UHGV-1335298_24	eggNOG-mapper	1095737.HMPREF1110_1213	NA	NA
UHGV-1335298_24	Pfam	PF07852	NA	DUF1642
UHGV-1335298_24	Structural annotation	PF07852	NA	NA
UHGV-1335298_25	PHROG	phrog_884	NA	unknown function
UHGV-1335298_25	UniRef90	UniRef90_UPI00158175AD	NA	NA
UHGV-1335298_25	eggNOG-mapper	768726.HMPREF9178_1075	NA	NA
UHGV-1335298_25	Pfam	PF07116	NA	DUF1372
UHGV-1335298_25	Structural annotation	PF07116	NA	NA
UHGV-1335298_26	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1335298_26	UniRef90	UniRef90_UPI001BDAC552	HNH endonuclease	NA
UHGV-1335298_26	eggNOG-mapper	521000.PROVRETT_05968	HNH endonuclease	NA
UHGV-1335298_26	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1335298_27	PHROG	phrog_98	NA	unknown function
UHGV-1335298_27	UniRef90	UniRef90_UPI001BDE64F2	YopX family protein	NA
UHGV-1335298_27	eggNOG-mapper	945021.TEH_08480	YopX protein	NA
UHGV-1335298_27	Pfam	PF09643	YopX protein	YopX
UHGV-1335298_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1335298_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1335298_29	PHROG	phrog_1814	NA	unknown function
UHGV-1335298_29	UniRef90	UniRef90_UPI001BD9BF6B	NA	NA
UHGV-1335298_29	Pfam	PF07067	NA	DUF1340
UHGV-1335298_29	Structural annotation	PF07067	NA	NA
UHGV-1335298_30	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1335298_30	UniRef90	UniRef90_A0A286QR68	ArpU late transcriptional regulator	NA
UHGV-1335298_30	eggNOG-mapper	173707.Q938L8_9CAUD	NA	NA
UHGV-1335298_30	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1335298_30	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-1335298_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1335298_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1335298_31	UniRef90	UniRef90_UPI001BDE0009	terminase small subunit	NA
UHGV-1335298_31	eggNOG-mapper	1054460.SPPN_00130	DNA packaging	NA
UHGV-1335298_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1335298_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1335298_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1335298_32	UniRef90	UniRef90_A0A286QPG0	TerL	NA
UHGV-1335298_32	eggNOG-mapper	73422.L0P509_9CAUD	Terminase-like family	NA
UHGV-1335298_32	Structural annotation	PF04466, MF_04148, NF007827, COG1783	NA	NA
UHGV-1335298_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1335298_33	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1335298_33	UniRef90	UniRef90_Q56SA2	Terminase large subunit	NA
UHGV-1335298_33	eggNOG-mapper	73422.L0P509_9CAUD	Terminase-like family	NA
UHGV-1335298_33	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1335298_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-1335298_34	UniRef90	UniRef90_UPI001BDE5C21	phage portal protein	NA
UHGV-1335298_34	eggNOG-mapper	306323.Q56SA1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1335298_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1335298_34	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1335298_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1335298_35	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1335298_35	UniRef90	UniRef90_UPI0019D6206A	minor capsid protein	NA
UHGV-1335298_35	eggNOG-mapper	1385385.U6E9F1_9CAUD	Phage Mu protein F like protein	NA
UHGV-1335298_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1335298_35	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1335298_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1335298_36	PHROG	phrog_17631	NA	unknown function
UHGV-1335298_36	eggNOG-mapper	585203.SMSK564_1007	NA	NA