UHGV-1336448

Genome information

Genome length 38,206 bps

CDS count 54

Completeness 89.51% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-1336448
vOTU ID	vOTU-033007
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Monaco_MBA1312_NODE_15_length_38206_cov_15.127336
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.4
Jumbo phage	No

Genome content
Genome length	38,206 bps
GC content	56.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.26%
Average CDS length	656.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1336448_1	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1336448_1	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-1336448_1	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-1336448_1	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1336448_1	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1336448_1	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-1336448_1	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-1336448_7	PHROG	phrog_38832	NA	unknown function
UHGV-1336448_7	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1336448_8	PHROG	phrog_22543	NA	unknown function
UHGV-1336448_8	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-1336448_12	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-1336448_13	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1336448_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1336448_13	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-1336448_13	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1336448_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1336448_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1336448_13	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1336448_14	UniRef90	UniRef90_A0A8D9PDT2	Brinker DNA-binding domain protein	NA
UHGV-1336448_14	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1336448_14	Structural annotation	PF04218, COG3677	NA	NA
UHGV-1336448_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1336448_15	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1336448_15	UniRef90	UniRef90_A0A8D9PDR5	Large subunit terminase	NA
UHGV-1336448_15	eggNOG-mapper	657322.FPR_02290	Terminase-like family	NA
UHGV-1336448_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1336448_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-1336448_15	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1336448_16	PHROG	phrog_156	portal protein	head and packaging
UHGV-1336448_16	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-1336448_16	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-1336448_16	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1336448_17	UniRef90	UniRef90_A0A8D9PDR6	YsxB-like protein	NA
UHGV-1336448_17	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1336448_17	Structural annotation	NF011128, COG2868	NA	NA
UHGV-1336448_18	PHROG	phrog_13908	NA	unknown function
UHGV-1336448_18	UniRef90	UniRef90_A0A844DRV7	Ribosomal-processing cysteine protease Prp	NA
UHGV-1336448_18	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1336448_19	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1336448_19	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-1336448_19	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-1336448_19	Pfam	PF13252	NA	DUF4043
UHGV-1336448_19	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1336448_19	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1336448_20	PHROG	phrog_15239	NA	unknown function
UHGV-1336448_20	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-1336448_21	PHROG	phrog_819	tail protein	tail
UHGV-1336448_21	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-1336448_21	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-1336448_22	PHROG	phrog_4105	NA	unknown function
UHGV-1336448_22	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-1336448_22	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-1336448_23	PHROG	phrog_881	holin	lysis
UHGV-1336448_23	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-1336448_23	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-1336448_23	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1336448_23	Structural annotation	PF16938, COG3237	NA	NA
UHGV-1336448_24	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1336448_24	PHROG	phrog_1493	endolysin	lysis
UHGV-1336448_24	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-1336448_24	eggNOG-mapper	411473.RUMCAL_02267	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1336448_24	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1336448_24	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1336448_24	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1336448_24	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-1336448_25	PHROG	phrog_12105	NA	unknown function
UHGV-1336448_25	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-1336448_26	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1336448_26	UniRef90	UniRef90_A0A8D9UH72	Stabilization protein (Fragment)	NA
UHGV-1336448_26	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-1336448_26	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1336448_27	UniRef90	UniRef90_A0A8D9UGT1	Sigma C capsid protein	NA
UHGV-1336448_28	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1336448_29	PHROG	phrog_22978	NA	unknown function
UHGV-1336448_29	UniRef90	UniRef90_A0A1Y4WLF7	PBECR5 domain-containing protein	NA
UHGV-1336448_29	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-1336448_29	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-1336448_30	PHROG	phrog_3754	NA	unknown function
UHGV-1336448_30	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1336448_31	PHROG	phrog_21718	NA	unknown function
UHGV-1336448_31	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1336448_32	PHROG	phrog_22984	NA	unknown function
UHGV-1336448_33	PHROG	phrog_16490	NA	unknown function
UHGV-1336448_33	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1336448_34	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1336448_34	UniRef90	UniRef90_UPI001BFED834	HNH endonuclease	NA
UHGV-1336448_34	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-1336448_35	PHROG	phrog_20016	NA	unknown function
UHGV-1336448_35	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1336448_35	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1336448_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1336448_36	Structural annotation	PF12510	NA	NA
UHGV-1336448_37	KOfam	K14059	int; integrase	NA
UHGV-1336448_37	PHROG	phrog_1	integrase	integration and excision
UHGV-1336448_37	UniRef90	UniRef90_A0A8D9UGU2	Integrase	NA
UHGV-1336448_37	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-1336448_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1336448_37	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1336448_37	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1336448_38	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-1336448_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1336448_38	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-1336448_40	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-1336448_40	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-1336448_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1336448_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1336448_40	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1336448_43	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-1336448_43	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1336448_44	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-1336448_46	PHROG	phrog_22529	NA	unknown function
UHGV-1336448_46	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-1336448_46	eggNOG-mapper	742735.HMPREF9467_00444	3D domain protein	NA
UHGV-1336448_46	Pfam	PF06725	3D domain	3D
UHGV-1336448_46	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-1336448_46	Structural annotation	COG3584	NA	NA
UHGV-1336448_48	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-1336448_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1336448_48	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-1336448_50	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-1336448_50	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-1336448_50	Pfam	PF06378	NA	DUF1071
UHGV-1336448_50	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-1336448_51	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-1336448_51	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1336448_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1336448_52	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1336448_52	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1336448_52	Structural annotation	PF05772	NA	NA
UHGV-1336448_53	PHROG	phrog_7566	NA	unknown function
UHGV-1336448_53	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-1336448_53	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-1336448_54	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1336448_54	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1336448_54	UniRef90	UniRef90_R5CX84	Single-stranded DNA-binding protein	NA
UHGV-1336448_54	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-1336448_54	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1336448_54	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1336448_54	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1336448_54	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1336448_54	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA