UHGV-1337546

Genome information

Genome length 59,269 bps

CDS count 104

Completeness 99.90% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-1337546
vOTU ID	vOTU-012429
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341667_NODE_237_length_59269_cov_5.389621
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.27
Jumbo phage	No

Genome content
Genome length	59,269 bps
GC content	47.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	104
CDS density	83.44%
Average CDS length	479.28 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1337546_2	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-1337546_2	Structural annotation	TIGR01560	NA	NA
UHGV-1337546_3	PHROG	phrog_29	major head protein	head and packaging
UHGV-1337546_3	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-1337546_3	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-1337546_3	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1337546_3	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1337546_7	PHROG	phrog_64	portal protein	head and packaging
UHGV-1337546_7	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-1337546_7	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1337546_7	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1337546_7	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1337546_8	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1337546_8	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1337546_8	UniRef90	UniRef90_UPI001C01192B	DNA adenine methylase	NA
UHGV-1337546_8	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1337546_8	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-1337546_8	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1337546_8	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-1337546_10	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1337546_10	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-1337546_10	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-1337546_10	COG	COG5410	NA	NA
UHGV-1337546_10	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1337546_12	Structural annotation	NF009949	NA	NA
UHGV-1337546_14	KOfam	K21528	gin; serine recombinase [EC:3.1.22.- 6.5.1.-]	NA
UHGV-1337546_14	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1337546_14	UniRef90	UniRef90_A0A1H3G7A1	Site-specific DNA recombinase	NA
UHGV-1337546_14	eggNOG-mapper	931626.Awo_c01430	Resolvase, N terminal domain	NA
UHGV-1337546_14	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1337546_14	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1337546_14	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-1337546_16	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-1337546_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1337546_17	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1337546_17	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-1337546_17	eggNOG-mapper	416870.llmg_0797	ORF6C domain	NA
UHGV-1337546_17	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1337546_17	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1337546_17	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1337546_17	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-1337546_19	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-1337546_19	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-1337546_19	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-1337546_24	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1337546_24	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1337546_25	PHROG	phrog_1709	NA	unknown function
UHGV-1337546_25	eggNOG-mapper	1280686.AUKE01000002_gene1328	NA	NA
UHGV-1337546_27	PHROG	phrog_419	NA	unknown function
UHGV-1337546_27	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-1337546_27	eggNOG-mapper	768486.EHR_02665	NA	NA
UHGV-1337546_27	Structural annotation	PF14083	NA	NA
UHGV-1337546_28	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1337546_28	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1337546_28	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-1337546_28	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-1337546_28	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1337546_28	COG	COG0305	Replicative DNA helicase	NA
UHGV-1337546_28	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1337546_29	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1337546_29	Pfam	PF19808	NA	DUF6291
UHGV-1337546_29	Structural annotation	PF19808	NA	NA
UHGV-1337546_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1337546_30	Structural annotation	PF14354	NA	NA
UHGV-1337546_41	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-1337546_41	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-1337546_41	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-1337546_41	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-1337546_44	Structural annotation	PF16677	NA	NA
UHGV-1337546_45	PHROG	phrog_924	NA	unknown function
UHGV-1337546_45	UniRef90	UniRef90_UPI0015D20CF0	NA	NA
UHGV-1337546_45	Pfam	PF04448	NA	DUF551
UHGV-1337546_45	Structural annotation	NF041588	NA	NA
UHGV-1337546_52	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1337546_52	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-1337546_52	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1337546_52	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1337546_55	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1337546_55	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-1337546_55	UniRef90	UniRef90_A0A6L5TDR3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1337546_55	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1337546_55	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1337546_55	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1337546_55	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1337546_55	Structural annotation	TIGR00675	NA	NA
UHGV-1337546_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1337546_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1337546_56	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-1337546_56	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1337546_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1337546_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1337546_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1337546_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1337546_56	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1337546_57	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1337546_57	UniRef90	UniRef90_A0A3G2N781	HNH endonuclease	NA
UHGV-1337546_57	eggNOG-mapper	232237.Q7Y5F9_9CAUD	HNH endonuclease	NA
UHGV-1337546_57	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1337546_59	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-1337546_59	UniRef90	UniRef90_A0A7Y4S123	Transcriptional repressor NrdR (Fragment)	NA
UHGV-1337546_59	eggNOG-mapper	1132855.KB913035_gene1070	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-1337546_59	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-1337546_59	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-1337546_59	Structural annotation	PF04606, NF007241	NA	NA
UHGV-1337546_60	Structural annotation	PF14143	NA	NA
UHGV-1337546_62	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-1337546_62	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1337546_63	Structural annotation	TIGR03826	NA	NA
UHGV-1337546_65	Structural annotation	PF10922	NA	NA
UHGV-1337546_66	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1337546_66	UniRef90	UniRef90_UPI000CF98FCD	phage regulatory protein/antirepressor Ant	NA
UHGV-1337546_66	eggNOG-mapper	903814.ELI_2129	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1337546_66	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1337546_66	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1337546_66	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1337546_66	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1337546_66	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1337546_67	UniRef90	UniRef90_A0A7X1LWA7	XRE family transcriptional regulator	NA
UHGV-1337546_67	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-1337546_67	Structural annotation	TIGR03070	NA	NA
UHGV-1337546_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1337546_68	UniRef90	UniRef90_A0A373XY93	XRE family transcriptional regulator	NA
UHGV-1337546_68	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1337546_68	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1337546_68	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-1337546_73	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1337546_73	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-1337546_73	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1337546_73	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1337546_74	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1337546_74	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-1337546_74	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-1337546_74	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-1337546_74	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-1337546_74	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1337546_74	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-1337546_76	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1337546_76	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1337546_76	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-1337546_76	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-1337546_76	Pfam	PF13614	AAA domain	AAA_31
UHGV-1337546_76	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1337546_76	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1337546_77	Pfam	PF04448	NA	DUF551
UHGV-1337546_78	Structural annotation	PF07878	NA	NA
UHGV-1337546_79	PHROG	phrog_3896	NA	unknown function
UHGV-1337546_79	eggNOG-mapper	397290.C810_01338	NA	NA
UHGV-1337546_80	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1337546_80	UniRef90	UniRef90_UPI001DACB905	ORF6C domain-containing protein	NA
UHGV-1337546_80	eggNOG-mapper	1121115.AXVN01000056_gene2483	BRO family, N-terminal domain	NA
UHGV-1337546_80	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1337546_80	COG	COG3617	Prophage antirepressor	NA
UHGV-1337546_80	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-1337546_82	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1337546_83	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-1337546_84	PHROG	phrog_16490	NA	unknown function
UHGV-1337546_84	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1337546_88	Structural annotation	PF07870, MF_01506	NA	NA
UHGV-1337546_89	PHROG	phrog_15303	NA	unknown function
UHGV-1337546_91	KOfam	K07273	acm; lysozyme	NA
UHGV-1337546_91	PHROG	phrog_291	endolysin	lysis
UHGV-1337546_91	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-1337546_91	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-1337546_91	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1337546_91	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1337546_91	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1337546_92	KOfam	K01051	E3.1.1.11; pectinesterase [EC:3.1.1.11]	NA
UHGV-1337546_92	UniRef90	UniRef90_UPI001D0919FE	pectinesterase family protein	NA
UHGV-1337546_92	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-1337546_94	PHROG	phrog_6616	tail protein	tail
UHGV-1337546_94	eggNOG-mapper	1408438.JADD01000040_gene811	NA	NA
UHGV-1337546_96	PHROG	phrog_1194	NA	unknown function
UHGV-1337546_96	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-1337546_96	Pfam	PF20458	NA	DUF6711
UHGV-1337546_96	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-1337546_97	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1337546_97	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-1337546_97	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1337546_98	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1337546_98	UniRef90	UniRef90_R6DYC9	Phage-related protein-like protein	NA
UHGV-1337546_98	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1337546_98	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1337546_99	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-1337546_100	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-1337546_100	Pfam	PF16478	NA	DUF5055
UHGV-1337546_100	Structural annotation	PF16478	NA	NA
UHGV-1337546_101	PHROG	phrog_158	major tail protein	tail
UHGV-1337546_101	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-1337546_101	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-1337546_101	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1337546_102	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1337546_103	eggNOG-mapper	476272.RUMHYD_01963	NA	NA