UHGV-1337846

Genome information

Genome length 42,863 bps

CDS count 59

Completeness 63.13% (medium-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-1337846
vOTU ID	vOTU-017693
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Minot_Diet_SRR5088940_NODE_54_length_42863_cov_7.553868
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	63.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.16
Jumbo phage	No

Genome content
Genome length	42,863 bps
GC content	30.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.66%
Average CDS length	654.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1337846_1	UniRef90	UniRef90_UPI001E532354	DNA-packaging protein	NA
UHGV-1337846_1	eggNOG-mapper	999411.HMPREF1092_03330	DNA-packaging protein gp3	NA
UHGV-1337846_6	PHROG	phrog_2655	excisionase	integration and excision
UHGV-1337846_6	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-1337846_6	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-1337846_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1337846_7	eggNOG-mapper	1443125.Z962_12420	NA	NA
UHGV-1337846_8	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1337846_8	UniRef90	UniRef90_A0A336QP04	ERCC4 domain-containing protein	NA
UHGV-1337846_8	eggNOG-mapper	1345695.CLSA_c30130	ERCC4 domain	NA
UHGV-1337846_8	Structural annotation	PF02732, NF040956	NA	NA
UHGV-1337846_11	PHROG	phrog_5164	NA	unknown function
UHGV-1337846_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1337846_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1337846_13	UniRef90	UniRef90_UPI000C079352	single-stranded DNA-binding protein	NA
UHGV-1337846_13	eggNOG-mapper	1414720.CBYM010000010_gene3150	Single-stranded DNA-binding protein	NA
UHGV-1337846_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1337846_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1337846_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1337846_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1337846_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1337846_16	PHROG	phrog_1029	NA	unknown function
UHGV-1337846_16	eggNOG-mapper	1391647.AVSV01000003_gene1793	NA	NA
UHGV-1337846_16	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1337846_17	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1337846_17	UniRef90	UniRef90_A0A3P6K1V9	Replication terminator protein, phage associated	NA
UHGV-1337846_17	eggNOG-mapper	536232.CLM_2556	replication terminator protein, phage associated	NA
UHGV-1337846_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1337846_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1337846_18	UniRef90	UniRef90_A0A355D5R1	AAA family ATPase	NA
UHGV-1337846_18	eggNOG-mapper	1345695.CLSA_c35690	PFAM IstB-like ATP binding protein	NA
UHGV-1337846_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1337846_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1337846_18	Structural annotation	PF01695, MF_00377, NF005378, COG1484	NA	NA
UHGV-1337846_19	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1337846_19	UniRef90	UniRef90_A0A7H4KVQ7	Phg_2220_C domain-containing protein	NA
UHGV-1337846_19	eggNOG-mapper	1295642.H839_08149	Replication initiation and membrane attachment	NA
UHGV-1337846_19	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1337846_19	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1337846_19	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1337846_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1337846_19	Structural annotation	PF08222, NF033788, COG4901	NA	NA
UHGV-1337846_21	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1337846_21	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1337846_21	UniRef90	UniRef90_A0A072YLV9	Beta-lactamase	NA
UHGV-1337846_21	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1337846_21	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1337846_21	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1337846_21	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-1337846_24	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1337846_24	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1337846_24	UniRef90	UniRef90_UPI0016029EDE	recombinase RecT	NA
UHGV-1337846_24	eggNOG-mapper	1415774.U728_1703	RecT family	NA
UHGV-1337846_24	Pfam	PF03837	RecT family	RecT
UHGV-1337846_24	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1337846_24	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1337846_25	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1337846_25	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1337846_25	UniRef90	UniRef90_A0A1V4SW40	Chromosome partition protein Smc	NA
UHGV-1337846_25	eggNOG-mapper	1391647.AVSV01000022_gene2522	nuclear chromosome segregation	NA
UHGV-1337846_25	Pfam	PF13476	AAA domain	AAA_23
UHGV-1337846_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1337846_25	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1337846_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1337846_27	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1337846_27	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1337846_28	UniRef90	UniRef90_A0A6B4MIR6	Recombinase	NA
UHGV-1337846_28	eggNOG-mapper	1415774.U728_535	Plasmid recombination enzyme	NA
UHGV-1337846_28	Pfam	PF01076	Plasmid recombination enzyme	Mob_Pre
UHGV-1337846_28	COG	COG1193	dsDNA-specific endonuclease/ATPase MutS2	NA
UHGV-1337846_29	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1337846_29	UniRef90	UniRef90_UPI001BE900EB	NA	NA
UHGV-1337846_29	eggNOG-mapper	1541960.KQ78_01268	NA	NA
UHGV-1337846_29	Pfam	PF21817	CapR homology domain	CapR
UHGV-1337846_29	Structural annotation	PF04480, PF14311, MF_04160, NF007294, COG3727	NA	NA
UHGV-1337846_30	eggNOG-mapper	1415774.U728_535	Plasmid recombination enzyme	NA
UHGV-1337846_30	Pfam	PF01076	Plasmid recombination enzyme	Mob_Pre
UHGV-1337846_30	COG	COG1193	dsDNA-specific endonuclease/ATPase MutS2	NA
UHGV-1337846_31	KOfam	K03205	virD4, lvhD4; type IV secretion system protein VirD4 [EC:7.4.2.8]	NA
UHGV-1337846_31	UniRef90	UniRef90_A0A846JRN9	Type IV secretory system conjugative DNA transfer family protein	NA
UHGV-1337846_31	eggNOG-mapper	1415774.U728_534	unidirectional conjugation	NA
UHGV-1337846_31	Pfam	PF02534	Type IV secretory system Conjugative DNA transfer	T4SS-DNA_transf
UHGV-1337846_31	COG	COG3505	Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase	NA
UHGV-1337846_31	Structural annotation	PF02534, NF010472, COG3505	NA	NA
UHGV-1337846_40	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-1337846_40	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-1337846_40	UniRef90	UniRef90_UPI00196715AD	ParM/StbA family protein	NA
UHGV-1337846_40	eggNOG-mapper	536233.CLO_0569	cell division	NA
UHGV-1337846_40	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-1337846_40	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-1337846_40	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-1337846_41	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1337846_41	PHROG	phrog_435	endolysin	lysis
UHGV-1337846_41	UniRef90	UniRef90_UPI0006C0CFD4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1337846_41	eggNOG-mapper	1280689.AUJC01000011_gene1538	Cell wall hydrolase autolysin	NA
UHGV-1337846_41	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1337846_41	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1337846_41	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-1337846_42	PHROG	phrog_20258	NA	unknown function
UHGV-1337846_42	eggNOG-mapper	1280689.AUJC01000011_gene1537	NA	NA
UHGV-1337846_44	PHROG	phrog_6651	internal virion protein	head and packaging
UHGV-1337846_44	UniRef90	UniRef90_A0A6M3ISU9	Putative structural protein	NA
UHGV-1337846_44	eggNOG-mapper	1268072.PSAB_06120	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-1337846_44	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-1337846_46	PHROG	phrog_24267	NA	unknown function
UHGV-1337846_46	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-1337846_46	eggNOG-mapper	764299.STRIC_1424	tail collar domain protein	NA
UHGV-1337846_46	COG	COG4675	Phage tail collar domain	NA
UHGV-1337846_47	PHROG	phrog_5240	tail fiber protein	tail
UHGV-1337846_47	UniRef90	UniRef90_UPI00189D6502	SGNH/GDSL hydrolase family protein	NA
UHGV-1337846_47	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1337846_47	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1337846_48	eggNOG-mapper	1280689.AUJC01000011_gene1533	NA	NA
UHGV-1337846_48	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1337846_49	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1337846_49	UniRef90	UniRef90_UPI001F43F8A6	NA	NA
UHGV-1337846_49	eggNOG-mapper	1408437.JNJN01000001_gene1713	NA	NA
UHGV-1337846_49	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-1337846_50	PHROG	phrog_13046	NA	unknown function
UHGV-1337846_50	Structural annotation	PF20387	NA	NA
UHGV-1337846_52	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1337846_52	UniRef90	UniRef90_UPI001EDF36C4	N4-gp56 family major capsid protein	NA
UHGV-1337846_52	eggNOG-mapper	696281.Desru_1092	NA	NA
UHGV-1337846_52	Pfam	PF13252	NA	DUF4043
UHGV-1337846_52	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1337846_52	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1337846_54	PHROG	phrog_156	portal protein	head and packaging
UHGV-1337846_54	UniRef90	UniRef90_A0A0C9LYG8	Head-to-tail joining protein	NA
UHGV-1337846_54	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-1337846_54	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1337846_56	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1337846_56	UniRef90	UniRef90_UPI000949A396	phage terminase large subunit	NA
UHGV-1337846_56	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-1337846_56	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1337846_56	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1337846_56	COG	COG5362	Phage terminase large subunit	NA
UHGV-1337846_57	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1337846_57	UniRef90	UniRef90_UPI00188F74C3	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-1337846_57	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-1337846_57	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1337846_57	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1337846_57	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1337846_57	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1337846_58	PHROG	phrog_36964	terminase large subunit	head and packaging
UHGV-1337846_58	UniRef90	UniRef90_A0A1D7Y001	Terminase	NA
UHGV-1337846_58	eggNOG-mapper	314275.MADE_1014625	Terminase-like family	NA
UHGV-1337846_58	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-1337846_58	COG	COG3780	DNA endonuclease related to intein-encoded endonucleases	NA
UHGV-1337846_59	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1337846_59	PHROG	phrog_95	integrase	integration and excision
UHGV-1337846_59	UniRef90	UniRef90_A0A353QSX4	Recombinase family protein	NA
UHGV-1337846_59	eggNOG-mapper	1499683.CCFF01000005_gene63	resolvase	NA
UHGV-1337846_59	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1337846_59	Pfam	PF07508	Recombinase	Recombinase
UHGV-1337846_59	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1337846_59	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA