UHGV-1338034

Genome information

vOTU vOTU-020864

Genome length 49,841 bps

CDS count 78

Completeness 83.72% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-1338034
vOTU ID	vOTU-020864
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341692_NODE_154_length_82217_cov_8.023904
BioSample	SAMN00715242
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.07
Jumbo phage	No

Genome content
Genome length	49,841 bps
GC content	38.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	84.73%
Average CDS length	542.81 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1338034_1	UniRef90	UniRef90_UPI00094ED9E0	bacteriophage abortive infection AbiH family protein	NA
UHGV-1338034_1	eggNOG-mapper	1122217.KB899580_gene1655	Bacteriophage abortive infection AbiH	NA
UHGV-1338034_1	PADLOC	AbiH	AbiH	Abi
UHGV-1338034_1	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH
UHGV-1338034_1	Structural annotation	PF14253	NA	NA
UHGV-1338034_3	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-1338034_4	eggNOG-mapper	397290.C810_01348	NA	NA
UHGV-1338034_9	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1338034_9	UniRef90	UniRef90_A0A0F0C7T3	HTH cro/C1-type domain-containing protein	NA
UHGV-1338034_9	eggNOG-mapper	397288.C806_02605	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1338034_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1338034_9	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1338034_9	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-1338034_10	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1338034_10	UniRef90	UniRef90_UPI001C02FA3A	Rha family transcriptional regulator	NA
UHGV-1338034_10	eggNOG-mapper	97139.C824_03355	Phage regulatory protein	NA
UHGV-1338034_10	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1338034_10	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1338034_10	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1338034_10	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1338034_11	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-1338034_11	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-1338034_11	Structural annotation	PF16677	NA	NA
UHGV-1338034_16	Structural annotation	PF17902, COG2824	NA	NA
UHGV-1338034_19	Pfam	PF10122	NA	Mu-like_Com
UHGV-1338034_19	COG	COG4416	Mu-like prophage FluMu protein Com	NA
UHGV-1338034_19	Structural annotation	PF10122, COG4416	NA	NA
UHGV-1338034_21	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1338034_21	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-1338034_21	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-1338034_21	COG	COG5410	NA	NA
UHGV-1338034_21	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1338034_22	PHROG	phrog_11237	NA	unknown function
UHGV-1338034_22	eggNOG-mapper	476272.RUMHYD_01941	NA	NA
UHGV-1338034_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-1338034_23	UniRef90	UniRef90_UPI00156EA9F5	phage portal protein	NA
UHGV-1338034_23	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1338034_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1338034_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1338034_24	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-1338034_25	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1338034_25	UniRef90	UniRef90_UPI001D096CC5	NA	NA
UHGV-1338034_25	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-1338034_25	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1338034_25	Structural annotation	PF17236, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-1338034_26	UniRef90	UniRef90_UPI001D081DCE	phage head-tail connector protein	NA
UHGV-1338034_26	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-1338034_28	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-1338034_28	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1338034_30	PHROG	phrog_28328	NA	unknown function
UHGV-1338034_30	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-1338034_31	PHROG	phrog_1233	NA	unknown function
UHGV-1338034_31	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-1338034_31	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-1338034_32	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-1338034_32	AcrCatalog	cluster_24841	NA	NA
UHGV-1338034_32	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-1338034_33	Structural annotation	PF05657	NA	NA
UHGV-1338034_34	PHROG	phrog_158	major tail protein	tail
UHGV-1338034_34	UniRef90	UniRef90_UPI00156EB292	phage tail protein	NA
UHGV-1338034_34	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-1338034_34	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1338034_34	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1338034_37	PHROG	phrog_28918	NA	unknown function
UHGV-1338034_37	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-1338034_37	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-1338034_37	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1338034_38	UniRef90	UniRef90_A0A1Q6KJY9	zinc_ribbon_2 domain-containing protein	NA
UHGV-1338034_38	eggNOG-mapper	1235800.C819_00970	response to antibiotic	NA
UHGV-1338034_38	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1338034_38	COG	COG4640	NA	NA
UHGV-1338034_38	Structural annotation	NF041910	NA	NA
UHGV-1338034_39	PHROG	phrog_1194	NA	unknown function
UHGV-1338034_39	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-1338034_39	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1338034_40	PHROG	phrog_13879	NA	unknown function
UHGV-1338034_40	eggNOG-mapper	1304866.K413DRAFT_0774	NA	NA
UHGV-1338034_40	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-1338034_41	Structural annotation	PF15911	NA	NA
UHGV-1338034_42	PHROG	phrog_18725	NA	unknown function
UHGV-1338034_42	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-1338034_43	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-1338034_44	PHROG	phrog_937	hemolysin	other
UHGV-1338034_45	PHROG	phrog_1129	holin	lysis
UHGV-1338034_45	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-1338034_45	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1338034_45	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1338034_45	Structural annotation	PF06946	NA	NA
UHGV-1338034_46	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1338034_46	PHROG	phrog_435	endolysin	lysis
UHGV-1338034_46	UniRef90	UniRef90_UPI000E552B56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1338034_46	eggNOG-mapper	1235800.C819_02218	PFAM Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1338034_46	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1338034_46	Pfam	PF19087	NA	DUF5776
UHGV-1338034_46	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1338034_46	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1338034_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1338034_48	UniRef90	UniRef90_A0A1Q9J746	HTH cro/C1-type domain-containing protein	NA
UHGV-1338034_48	eggNOG-mapper	1449050.JNLE01000005_gene4847	Transcriptional	NA
UHGV-1338034_48	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1338034_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1338034_48	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1338034_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1338034_49	UniRef90	UniRef90_UPI00156E2D91	helix-turn-helix domain-containing protein	NA
UHGV-1338034_49	eggNOG-mapper	762051.LKI_09500	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators	NA
UHGV-1338034_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1338034_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1338034_49	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1338034_51	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1338034_51	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1338034_51	UniRef90	UniRef90_A0A7X5HXS5	Oxidoreductase	NA
UHGV-1338034_51	eggNOG-mapper	1540257.JQMW01000004_gene443	Phage antirepressor protein KilAC domain	NA
UHGV-1338034_51	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1338034_51	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1338034_51	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1338034_51	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1338034_52	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1338034_52	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1338034_52	UniRef90	UniRef90_A0A1Q9J883	Toxin Bro	NA
UHGV-1338034_52	eggNOG-mapper	397290.C810_01343	AntA/AntB antirepressor	NA
UHGV-1338034_52	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1338034_52	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1338034_52	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-1338034_53	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-1338034_53	PHROG	phrog_37855	NA	unknown function
UHGV-1338034_53	UniRef90	UniRef90_A0A1Q6KA48	Spo0A_C domain-containing protein	NA
UHGV-1338034_53	eggNOG-mapper	658088.HMPREF0987_00133	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-1338034_53	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-1338034_53	COG	COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	NA
UHGV-1338034_53	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-1338034_55	PHROG	phrog_19890	NA	unknown function
UHGV-1338034_55	UniRef90	UniRef90_UPI001C014972	transglycosylase SLT domain-containing protein	NA
UHGV-1338034_55	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-1338034_55	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1338034_55	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1338034_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1338034_56	PHROG	phrog_26861	NA	unknown function
UHGV-1338034_56	UniRef90	UniRef90_G2T2G3	Single-stranded DNA-binding protein	NA
UHGV-1338034_56	eggNOG-mapper	622312.ROSEINA2194_00317	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1338034_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1338034_56	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-1338034_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1338034_56	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1338034_58	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1338034_58	UniRef90	UniRef90_A0A413Z5U6	AAA_23 domain-containing protein	NA
UHGV-1338034_58	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-1338034_58	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1338034_58	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1338034_61	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-1338034_63	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1338034_63	UniRef90	UniRef90_UPI00189B4EB8	recombinase RecT	NA
UHGV-1338034_63	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-1338034_63	Pfam	PF03837	RecT family	RecT
UHGV-1338034_63	Structural annotation	NF007351, COG3723	NA	NA
UHGV-1338034_64	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-1338034_64	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-1338034_64	UniRef90	UniRef90_R9KKY4	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1338034_64	eggNOG-mapper	397290.C810_01455	sigma factor activity	NA
UHGV-1338034_64	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1338034_64	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1338034_64	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1338034_64	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1338034_64	Structural annotation	PF08281, PF04542, MF_00962, NF006158, COG1191	NA	NA
UHGV-1338034_65	eggNOG-mapper	1121098.HMPREF1534_01074	Metallo-beta-lactamase superfamily	NA
UHGV-1338034_65	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1338034_66	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1338034_66	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1338034_66	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-1338034_66	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-1338034_66	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1338034_66	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-1338034_67	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1338034_67	eggNOG-mapper	1232453.BAIF02000057_gene1139	NA	NA
UHGV-1338034_68	PHROG	phrog_1029	NA	unknown function
UHGV-1338034_68	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-1338034_68	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-1338034_68	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1338034_69	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1338034_69	UniRef90	UniRef90_A0A1Q9J756	ERCC4 domain-containing protein	NA
UHGV-1338034_69	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-1338034_69	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1338034_69	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-1338034_70	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1338034_70	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-1338034_70	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-1338034_70	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1338034_70	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1338034_70	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-1338034_71	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1338034_71	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1338034_71	UniRef90	UniRef90_A0A1Q9J827	DNA helicase	NA
UHGV-1338034_71	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-1338034_71	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1338034_71	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1338034_71	COG	COG0305	Replicative DNA helicase	NA
UHGV-1338034_71	Structural annotation	PF03796, MF_04154, NF005240, COG0305	NA	NA
UHGV-1338034_76	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-1338034_76	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-1338034_76	Structural annotation	PF18597	NA	NA
UHGV-1338034_77	PHROG	phrog_8684	NA	unknown function
UHGV-1338034_77	UniRef90	UniRef90_UPI000E4794A6	YopX family protein	NA
UHGV-1338034_77	eggNOG-mapper	742740.HMPREF9474_03496	YopX protein	NA
UHGV-1338034_77	Pfam	PF09643	YopX protein	YopX
UHGV-1338034_77	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1338034_78	KOfam	K14059	int; integrase	NA
UHGV-1338034_78	PHROG	phrog_1	integrase	integration and excision
UHGV-1338034_78	UniRef90	UniRef90_A0A1C5TX79	Tyrosine recombinase XerC	NA
UHGV-1338034_78	eggNOG-mapper	411489.CLOL250_02604	Site-specific recombinase, phage integrase family	NA
UHGV-1338034_78	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1338034_78	COG	COG0582	Integrase/recombinase, includes phage integrase	NA