UHGV-1338087

Genome information

Genome length 31,991 bps

CDS count 48

Completeness 75.13% (medium-quality)

geNomad score 0.9688

Prediction confidence Confident

Genome information
Genome ID	UHGV-1338087
vOTU ID	vOTU-033651
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341688_NODE_545_length_41296_cov_3.494047
BioSample	SAMN00715238
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9688
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.69
Jumbo phage	No

Genome content
Genome length	31,991 bps
GC content	50.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	86.46%
Average CDS length	578.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1338087_1	PHROG	phrog_18723	NA	unknown function
UHGV-1338087_2	eggNOG-mapper	665956.HMPREF1032_03261	NA	NA
UHGV-1338087_3	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1338087_3	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-1338087_3	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-1338087_4	PHROG	phrog_13046	NA	unknown function
UHGV-1338087_4	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-1338087_4	Structural annotation	PF20387	NA	NA
UHGV-1338087_5	PHROG	phrog_371	major head protein	head and packaging
UHGV-1338087_5	UniRef90	UniRef90_R5AAY6	Mu-like_gpT domain-containing protein	NA
UHGV-1338087_5	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-1338087_5	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1338087_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1338087_6	PHROG	phrog_24113	NA	unknown function
UHGV-1338087_6	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1338087_7	PHROG	phrog_35275	NA	unknown function
UHGV-1338087_7	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-1338087_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-1338087_10	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-1338087_10	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1338087_11	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1338087_11	PHROG	phrog_216	integrase	integration and excision
UHGV-1338087_11	UniRef90	UniRef90_R5AM78	Integrase family protein	NA
UHGV-1338087_11	eggNOG-mapper	97138.C820_00621	integrase family	NA
UHGV-1338087_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1338087_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1338087_11	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1338087_12	PHROG	phrog_24361	terminase	head and packaging
UHGV-1338087_12	UniRef90	UniRef90_R5AHR8	Putative terminase large subunit	NA
UHGV-1338087_12	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-1338087_12	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1338087_12	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1338087_13	eggNOG-mapper	97138.C820_00620	transposase activity	NA
UHGV-1338087_13	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1338087_14	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1338087_14	UniRef90	UniRef90_A0A844JNS5	Transposase	NA
UHGV-1338087_14	eggNOG-mapper	642492.Clole_1852	transposase activity	NA
UHGV-1338087_14	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1338087_16	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-1338087_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1338087_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1338087_18	UniRef90	UniRef90_R5AEW4	DNA helicase	NA
UHGV-1338087_18	eggNOG-mapper	293826.Amet_4768	Participates in initiation and elongation during chromosome replication	NA
UHGV-1338087_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1338087_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1338087_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-1338087_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1338087_19	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-1338087_19	UniRef90	UniRef90_R5AB02	DnaD domain protein	NA
UHGV-1338087_19	eggNOG-mapper	1231057.AMGD01000018_gene3636	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1338087_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1338087_19	Structural annotation	PF09681, TIGR01714, COG1846	NA	NA
UHGV-1338087_22	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-1338087_22	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1338087_24	PHROG	phrog_24386	NA	unknown function
UHGV-1338087_24	eggNOG-mapper	411460.RUMTOR_01374	COG NOG28949 non supervised orthologous group	NA
UHGV-1338087_24	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-1338087_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1338087_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1338087_27	UniRef90	UniRef90_A0A401LG78	HTH cro/C1-type domain-containing protein	NA
UHGV-1338087_27	eggNOG-mapper	935948.KE386495_gene1700	Helix-turn-helix XRE-family like proteins	NA
UHGV-1338087_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1338087_27	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1338087_29	PHROG	phrog_774	NA	unknown function
UHGV-1338087_29	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1338087_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1338087_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1338087_30	UniRef90	UniRef90_R5AMA1	Single-stranded DNA-binding protein	NA
UHGV-1338087_30	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-1338087_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1338087_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1338087_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1338087_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1338087_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1338087_31	PHROG	phrog_1029	NA	unknown function
UHGV-1338087_31	eggNOG-mapper	1510440.A0A068EPX8_9CAUD	NA	NA
UHGV-1338087_31	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1338087_32	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1338087_32	UniRef90	UniRef90_A0A350U067	Replication terminator protein	NA
UHGV-1338087_32	eggNOG-mapper	1499683.CCFF01000017_gene2598	replication terminator protein, phage associated	NA
UHGV-1338087_34	Structural annotation	PF06257, TIGR02728, COG4466	NA	NA
UHGV-1338087_43	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1338087_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1338087_43	UniRef90	UniRef90_R5AEY7	Helix-turn-helix protein	NA
UHGV-1338087_43	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-1338087_43	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1338087_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1338087_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1338087_45	UniRef90	UniRef90_A0A4U7JFZ1	Peptidoglycan-binding protein	NA
UHGV-1338087_45	eggNOG-mapper	1163671.JAGI01000002_gene1685	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-1338087_45	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-1338087_46	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1338087_46	PHROG	phrog_95	integrase	integration and excision
UHGV-1338087_46	UniRef90	UniRef90_R5AMB7	Recombinase	NA
UHGV-1338087_46	eggNOG-mapper	697281.Mahau_2563	resolvase	NA
UHGV-1338087_46	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1338087_46	Pfam	PF07508	Recombinase	Recombinase
UHGV-1338087_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1338087_46	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1338087_48	KOfam	K21405	acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR	NA
UHGV-1338087_48	PHROG	phrog_7998	NA	unknown function
UHGV-1338087_48	UniRef90	UniRef90_A0A401LG66	Sigma-54 factor interaction domain-containing protein	NA
UHGV-1338087_48	eggNOG-mapper	350688.Clos_0171	PFAM sigma-54 factor interaction domain-containing protein	NA
UHGV-1338087_48	PADLOC	RtcR_PspF2--CARF_AAA_HTH_MK_CARF_00012586	NA	CRISPR-CAS
UHGV-1338087_48	Pfam	PF00158	Sigma-54 interaction domain	Sigma54_activat
UHGV-1338087_48	COG	COG3829	RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains	NA