UHGV-1338145

Genome information

vOTU vOTU-020866

Genome length 47,555 bps

CDS count 80

Completeness 82.49% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-1338145
vOTU ID	vOTU-020866
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413557_NODE_204_length_47555_cov_16.941621
BioSample	SAMN00791902
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.27
Jumbo phage	No

Genome content
Genome length	47,555 bps
GC content	49.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	88.02%
Average CDS length	525.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1338145_1	PHROG	phrog_1709	NA	unknown function
UHGV-1338145_1	eggNOG-mapper	1280686.AUKE01000002_gene1328	NA	NA
UHGV-1338145_2	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1338145_2	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1338145_2	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-1338145_2	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-1338145_2	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1338145_2	COG	COG0305	Replicative DNA helicase	NA
UHGV-1338145_2	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1338145_3	PHROG	phrog_15768	NA	unknown function
UHGV-1338145_3	UniRef90	UniRef90_R5GGJ0	NA	NA
UHGV-1338145_3	eggNOG-mapper	521003.COLINT_02320	NA	NA
UHGV-1338145_3	Pfam	PF19808	NA	DUF6291
UHGV-1338145_3	Structural annotation	PF19808	NA	NA
UHGV-1338145_4	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-1338145_4	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1338145_4	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1338145_4	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1338145_4	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1338145_4	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1338145_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1338145_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1338145_6	eggNOG-mapper	1246448.ANAZ01000002_gene3943	Helix-turn-helix XRE-family like proteins	NA
UHGV-1338145_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1338145_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1338145_11	Structural annotation	PF16677	NA	NA
UHGV-1338145_12	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-1338145_19	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1338145_19	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-1338145_19	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1338145_19	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1338145_22	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1338145_22	UniRef90	UniRef90_A0A8J7KX41	HNH endonuclease	NA
UHGV-1338145_22	eggNOG-mapper	213777.R9R2C9_9CAUD	HNH endonuclease	NA
UHGV-1338145_22	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1338145_22	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1338145_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1338145_22	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1338145_23	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1338145_23	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1338145_23	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1338145_23	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1338145_23	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1338145_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1338145_23	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1338145_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1338145_23	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-1338145_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1338145_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1338145_24	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-1338145_24	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1338145_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1338145_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1338145_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1338145_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1338145_24	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1338145_25	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1338145_25	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-1338145_25	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-1338145_25	Pfam	PF04404	ERF superfamily	ERF
UHGV-1338145_25	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1338145_26	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-1338145_26	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-1338145_26	Structural annotation	PF13451	NA	NA
UHGV-1338145_28	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-1338145_28	UniRef90	UniRef90_A0A7Y4S123	Transcriptional repressor NrdR (Fragment)	NA
UHGV-1338145_28	eggNOG-mapper	1132855.KB913035_gene1070	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-1338145_28	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-1338145_28	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-1338145_28	Structural annotation	PF04606, NF007241	NA	NA
UHGV-1338145_29	Structural annotation	PF14143	NA	NA
UHGV-1338145_30	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1338145_30	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-1338145_32	Structural annotation	TIGR03826	NA	NA
UHGV-1338145_34	Structural annotation	PF10922	NA	NA
UHGV-1338145_35	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1338145_35	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1338145_35	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-1338145_35	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1338145_35	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1338145_35	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1338145_35	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1338145_35	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1338145_35	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1338145_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1338145_36	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-1338145_36	eggNOG-mapper	411460.RUMTOR_00063	helix-turn-helix	NA
UHGV-1338145_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1338145_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1338145_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1338145_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1338145_37	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1338145_41	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-1338145_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1338145_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1338145_41	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1338145_42	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1338145_42	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-1338145_42	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-1338145_42	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-1338145_42	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-1338145_42	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1338145_42	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-1338145_43	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1338145_43	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1338145_43	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-1338145_43	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-1338145_43	Pfam	PF13614	AAA domain	AAA_31
UHGV-1338145_43	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1338145_43	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1338145_45	Structural annotation	PF07878	NA	NA
UHGV-1338145_46	UniRef90	UniRef90_UPI0009300B98	CopG family transcriptional regulator	NA
UHGV-1338145_46	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-1338145_46	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1338145_47	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1338145_47	UniRef90	UniRef90_UPI001DACB905	ORF6C domain-containing protein	NA
UHGV-1338145_47	eggNOG-mapper	1121115.AXVN01000056_gene2483	BRO family, N-terminal domain	NA
UHGV-1338145_47	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1338145_47	COG	COG3617	Prophage antirepressor	NA
UHGV-1338145_47	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-1338145_48	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1338145_49	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-1338145_50	PHROG	phrog_16490	NA	unknown function
UHGV-1338145_50	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1338145_52	PHROG	phrog_21718	NA	unknown function
UHGV-1338145_55	PHROG	phrog_15303	NA	unknown function
UHGV-1338145_57	KOfam	K07273	acm; lysozyme	NA
UHGV-1338145_57	PHROG	phrog_291	endolysin	lysis
UHGV-1338145_57	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-1338145_57	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-1338145_57	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1338145_57	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1338145_57	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1338145_58	UniRef90	UniRef90_A0A844DDG4	XkdX family protein	NA
UHGV-1338145_58	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1338145_58	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1338145_60	PHROG	phrog_19280	NA	unknown function
UHGV-1338145_60	UniRef90	UniRef90_A0A844DHL3	NA	NA
UHGV-1338145_60	eggNOG-mapper	1203606.HMPREF1526_01924	NA	NA
UHGV-1338145_60	Pfam	PF19789	NA	DUF6273
UHGV-1338145_60	Structural annotation	PF19789	NA	NA
UHGV-1338145_63	PHROG	phrog_6616	tail protein	tail
UHGV-1338145_63	eggNOG-mapper	445971.ANASTE_00088	NA	NA
UHGV-1338145_63	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1338145_64	PHROG	phrog_1194	NA	unknown function
UHGV-1338145_64	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-1338145_64	Pfam	PF20458	NA	DUF6711
UHGV-1338145_64	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-1338145_65	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1338145_65	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1338145_65	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1338145_66	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-1338145_67	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-1338145_67	Pfam	PF16478	NA	DUF5055
UHGV-1338145_67	Structural annotation	PF16478	NA	NA
UHGV-1338145_68	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-1338145_68	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1338145_69	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1338145_71	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1338145_71	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1338145_72	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-1338145_72	Structural annotation	TIGR01560	NA	NA
UHGV-1338145_73	PHROG	phrog_29	major head protein	head and packaging
UHGV-1338145_73	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-1338145_73	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-1338145_73	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1338145_73	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1338145_76	PHROG	phrog_64	portal protein	head and packaging
UHGV-1338145_76	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-1338145_76	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1338145_76	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1338145_76	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1338145_78	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1338145_78	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-1338145_78	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-1338145_78	COG	COG5410	NA	NA
UHGV-1338145_78	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-1338145_79	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA