UHGV-1338408

Genome information

Genome length 24,883 bps

CDS count 38

Completeness 60.17% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-1338408
vOTU ID	vOTU-033661
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341597_NODE_382_length_24883_cov_4.959844
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.18
Jumbo phage	No

Genome content
Genome length	24,883 bps
GC content	37.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	89.45%
Average CDS length	588.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1338408_1	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-1338408_1	eggNOG-mapper	706434.HMPREF9429_00523	Phage virion morphogenesis	NA
UHGV-1338408_1	COG	COG5005	NA	NA
UHGV-1338408_3	PHROG	phrog_422	major head protein	head and packaging
UHGV-1338408_3	UniRef90	UniRef90_R5BRS0	Lj928 prophage protein	NA
UHGV-1338408_3	eggNOG-mapper	888060.HMPREF9081_1550	NA	NA
UHGV-1338408_3	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1338408_4	eggNOG-mapper	706434.HMPREF9429_00526	NA	NA
UHGV-1338408_6	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1338408_6	UniRef90	UniRef90_W1VC85	Ntox50 domain-containing protein	NA
UHGV-1338408_6	eggNOG-mapper	706434.HMPREF9429_00528	NA	NA
UHGV-1338408_7	PHROG	phrog_145	portal protein	head and packaging
UHGV-1338408_7	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-1338408_7	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-1338408_7	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1338408_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1338408_8	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1338408_8	UniRef90	UniRef90_X8H7N8	Terminase, large subunit, PBSX family	NA
UHGV-1338408_8	eggNOG-mapper	546273.VEIDISOL_00710	Phage terminase, large subunit	NA
UHGV-1338408_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1338408_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1338408_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1338408_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-1338408_8	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-1338408_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1338408_9	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1338408_9	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1338408_9	UniRef90	UniRef90_X8H8N9	Terminase small subunit	NA
UHGV-1338408_9	eggNOG-mapper	546273.VEIDISOL_00709	terminase, small subunit	NA
UHGV-1338408_9	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1338408_9	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1338408_9	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1338408_10	PHROG	phrog_33034	NA	unknown function
UHGV-1338408_12	PHROG	phrog_1558	NA	unknown function
UHGV-1338408_12	UniRef90	UniRef90_UPI0006B5171F	helix-turn-helix domain-containing protein	NA
UHGV-1338408_12	eggNOG-mapper	1401067.HMPREF0872_03430	NA	NA
UHGV-1338408_12	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-1338408_13	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1338408_13	UniRef90	UniRef90_A0A2S7ZCM0	NA	NA
UHGV-1338408_13	eggNOG-mapper	883156.HMPREF9282_01229	NA	NA
UHGV-1338408_13	Pfam	PF14359	NA	DUF4406
UHGV-1338408_13	Structural annotation	PF14359, TIGR03646, COG3613	NA	NA
UHGV-1338408_14	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1338408_14	UniRef90	UniRef90_A0A134C0X6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1338408_14	eggNOG-mapper	60520.HR47_13580	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1338408_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1338408_14	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1338408_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1338408_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1338408_15	UniRef90	UniRef90_X8H949	IstB-like ATP-binding protein	NA
UHGV-1338408_15	eggNOG-mapper	1401067.HMPREF0872_00395	DNA-dependent DNA replication	NA
UHGV-1338408_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1338408_15	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1338408_15	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-1338408_16	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1338408_16	UniRef90	UniRef90_D6KLE8	NA	NA
UHGV-1338408_16	eggNOG-mapper	1401067.HMPREF0872_03460	NA	NA
UHGV-1338408_16	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1338408_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1338408_16	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-1338408_17	PHROG	phrog_29533	NA	unknown function
UHGV-1338408_18	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1338408_18	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1338408_18	UniRef90	UniRef90_W1V8U0	Lactamase_B domain-containing protein	NA
UHGV-1338408_18	eggNOG-mapper	1401067.HMPREF0872_03470	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-1338408_18	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1338408_18	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1338408_18	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1338408_19	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1338408_19	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1338408_19	UniRef90	UniRef90_A0A096AMA3	Recombinase RecT	NA
UHGV-1338408_19	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-1338408_19	Pfam	PF03837	RecT family	RecT
UHGV-1338408_19	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1338408_19	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1338408_19	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1338408_20	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1338408_20	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1338408_20	UniRef90	UniRef90_A0A096BYG9	Phage antirepressor protein	NA
UHGV-1338408_20	eggNOG-mapper	1401067.HMPREF0872_03480	BRO family, N-terminal domain	NA
UHGV-1338408_20	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1338408_20	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1338408_20	COG	COG3617	Prophage antirepressor	NA
UHGV-1338408_20	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1338408_21	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1338408_21	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1338408_21	UniRef90	UniRef90_A0A096AL19	AAA_23 domain-containing protein	NA
UHGV-1338408_21	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-1338408_21	Pfam	PF13476	AAA domain	AAA_23
UHGV-1338408_21	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1338408_21	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1338408_22	PHROG	phrog_16315	NA	unknown function
UHGV-1338408_22	UniRef90	UniRef90_UPI000B139567	PcfJ domain-containing protein	NA
UHGV-1338408_22	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-1338408_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1338408_22	Structural annotation	PF14284	NA	NA
UHGV-1338408_23	PHROG	phrog_29844	NA	unknown function
UHGV-1338408_24	PHROG	phrog_35266	NA	unknown function
UHGV-1338408_24	UniRef90	UniRef90_D6KLE0	Putative choline binding protein A	NA
UHGV-1338408_26	Structural annotation	NF041909	NA	NA
UHGV-1338408_28	UniRef90	UniRef90_X8H976	DNA-binding helix-turn-helix protein	NA
UHGV-1338408_28	eggNOG-mapper	546273.VEIDISOL_00695	Helix-turn-helix domain	NA
UHGV-1338408_28	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1338408_28	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-1338408_29	UniRef90	UniRef90_UPI001D05A978	helix-turn-helix domain-containing protein	NA
UHGV-1338408_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1338408_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1338408_29	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1338408_33	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1338408_33	UniRef90	UniRef90_A0A380N5B8	HTH cro/C1-type domain-containing protein	NA
UHGV-1338408_33	eggNOG-mapper	1128111.HMPREF0870_01791	Helix-turn-helix XRE-family like proteins	NA
UHGV-1338408_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1338408_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1338408_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1338408_34	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1338408_34	UniRef90	UniRef90_A0A380N6N4	HTH cro/C1-type domain-containing protein	NA
UHGV-1338408_34	eggNOG-mapper	1128111.HMPREF0870_01792	Helix-turn-helix XRE-family like proteins	NA
UHGV-1338408_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1338408_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1338408_34	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1338408_35	PHROG	phrog_9699	NA	unknown function
UHGV-1338408_35	eggNOG-mapper	679201.HMPREF9334_00292	NA	NA
UHGV-1338408_36	PHROG	phrog_20936	NA	unknown function
UHGV-1338408_36	UniRef90	UniRef90_W1V9S8	Peptidase_M78 domain-containing protein	NA
UHGV-1338408_36	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1338408_36	Structural annotation	PF06114	NA	NA
UHGV-1338408_37	Structural annotation	PF16747	NA	NA
UHGV-1338408_38	KOfam	K14059	int; integrase	NA
UHGV-1338408_38	PHROG	phrog_1	integrase	integration and excision
UHGV-1338408_38	UniRef90	UniRef90_D6KLC6	Putative site-specific recombinase, phage integrase family	NA
UHGV-1338408_38	eggNOG-mapper	546273.VEIDISOL_00689	Belongs to the 'phage' integrase family	NA
UHGV-1338408_38	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1338408_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1338408_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1338408_38	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA