UHGV-1338413

Genome information

Genome length 23,534 bps

CDS count 33

Completeness 58.50% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-1338413
vOTU ID	vOTU-033662
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Rampelli_SM_02_NODE_895_length_23534_cov_2.985604
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	5.72
Jumbo phage	No

Genome content
Genome length	23,534 bps
GC content	43.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	93.44%
Average CDS length	667.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1338413_2	PHROG	phrog_22529	NA	unknown function
UHGV-1338413_2	UniRef90	UniRef90_R6EKT9	3D domain-containing protein	NA
UHGV-1338413_2	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-1338413_2	Pfam	PF06725	3D domain	3D
UHGV-1338413_2	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-1338413_2	Structural annotation	PF06725, MF_02071, NF040677, COG3584	NA	NA
UHGV-1338413_4	Structural annotation	NF040990	NA	NA
UHGV-1338413_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1338413_6	UniRef90	UniRef90_UPI0018AA5D9A	helix-turn-helix transcriptional regulator	NA
UHGV-1338413_6	eggNOG-mapper	1201292.DR75_1541	Helix-turn-helix XRE-family like proteins	NA
UHGV-1338413_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1338413_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1338413_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1338413_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1338413_9	UniRef90	UniRef90_R7N2W9	DNA-binding helix-turn-helix protein	NA
UHGV-1338413_9	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1338413_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1338413_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1338413_9	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-1338413_10	PHROG	phrog_20936	NA	unknown function
UHGV-1338413_10	UniRef90	UniRef90_R5BGI4	Peptidase_M78 domain-containing protein	NA
UHGV-1338413_10	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1338413_10	Structural annotation	PF06114	NA	NA
UHGV-1338413_11	KOfam	K06882	NA	NA
UHGV-1338413_11	PHROG	phrog_14556	NA	unknown function
UHGV-1338413_11	eggNOG-mapper	645991.Sgly_2993	cell wall binding repeat 2	NA
UHGV-1338413_11	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-1338413_12	KOfam	K14059	int; integrase	NA
UHGV-1338413_12	PHROG	phrog_1	integrase	integration and excision
UHGV-1338413_12	UniRef90	UniRef90_A0A845QLR8	Tyr recombinase domain-containing protein	NA
UHGV-1338413_12	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-1338413_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1338413_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1338413_12	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1338413_14	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1338413_15	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-1338413_17	PHROG	phrog_21718	NA	unknown function
UHGV-1338413_17	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1338413_18	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1338413_18	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-1338413_18	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-1338413_19	PHROG	phrog_6918	holin	lysis
UHGV-1338413_19	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1338413_19	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1338413_21	PHROG	phrog_4105	NA	unknown function
UHGV-1338413_22	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1338413_22	PHROG	phrog_894	endolysin	lysis
UHGV-1338413_22	UniRef90	UniRef90_A0A3B8P2A9	Peptidase M15	NA
UHGV-1338413_22	eggNOG-mapper	390235.PputW619_1627	peptidase M15A	NA
UHGV-1338413_22	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1338413_22	COG	COG3108	NA	NA
UHGV-1338413_22	Structural annotation	PF08291, COG3108	NA	NA
UHGV-1338413_23	UniRef90	UniRef90_A0A845QMU2	PBECR3 domain-containing protein	NA
UHGV-1338413_23	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-1338413_23	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-1338413_23	Structural annotation	PF18857, PF18798	NA	NA
UHGV-1338413_24	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1338413_24	Structural annotation	TIGR02559	NA	NA
UHGV-1338413_25	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-1338413_25	PHROG	phrog_18593	NA	unknown function
UHGV-1338413_25	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-1338413_25	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-1338413_25	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1338413_26	eggNOG-mapper	931626.Awo_c34130	Leucine rich repeats (6 copies)	NA
UHGV-1338413_26	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-1338413_26	Pfam	PF19789	NA	DUF6273
UHGV-1338413_26	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-1338413_26	Structural annotation	PF19789	NA	NA
UHGV-1338413_28	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1338413_28	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-1338413_28	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-1338413_30	Structural annotation	PF07100, COG4288	NA	NA
UHGV-1338413_31	PHROG	phrog_267	major head protein	head and packaging
UHGV-1338413_31	UniRef90	UniRef90_A0A7C6CNA9	P22 coat protein-protein 5 domain protein	NA
UHGV-1338413_31	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-1338413_31	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1338413_33	PHROG	phrog_156	portal protein	head and packaging
UHGV-1338413_33	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA