UHGV-1339393

Genome information

vOTU vOTU-019995

Genome length 31,349 bps

CDS count 50

Completeness 51.41% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-1339393
vOTU ID	vOTU-019995
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413558_NODE_420_length_31349_cov_3.288809
BioSample	SAMN00791903
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	51.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.5
Jumbo phage	No

Genome content
Genome length	31,349 bps
GC content	53.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.46%
Average CDS length	583.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1339393_1	KOfam	K14059	int; integrase	NA
UHGV-1339393_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1339393_1	UniRef90	UniRef90_UPI00137A83B4	site-specific integrase	NA
UHGV-1339393_1	eggNOG-mapper	760568.Desku_1398	Belongs to the 'phage' integrase family	NA
UHGV-1339393_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1339393_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1339393_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1339393_2	KOfam	K14059	int; integrase	NA
UHGV-1339393_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1339393_2	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-1339393_2	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-1339393_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1339393_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1339393_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1339393_3	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-1339393_3	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1339393_3	UniRef90	UniRef90_A0A1V5GNA2	HSDR_N_2 domain-containing protein	NA
UHGV-1339393_3	eggNOG-mapper	1286171.EAL2_808p07570	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-1339393_3	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-1339393_3	COG	COG4748	NA	NA
UHGV-1339393_3	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-1339393_5	PHROG	phrog_1914	NA	unknown function
UHGV-1339393_5	UniRef90	UniRef90_W0U704	Peptidase_M78 domain-containing protein	NA
UHGV-1339393_5	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-1339393_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1339393_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1339393_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1339393_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1339393_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1339393_6	UniRef90	UniRef90_C0DAM1	DNA-binding helix-turn-helix protein	NA
UHGV-1339393_6	eggNOG-mapper	706434.HMPREF9429_00594	Helix-turn-helix XRE-family like proteins	NA
UHGV-1339393_6	PADLOC	Control_protein_00002	control protein	RM
UHGV-1339393_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1339393_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1339393_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1339393_7	UniRef90	UniRef90_A0A396NP63	NA	NA
UHGV-1339393_7	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-1339393_7	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1339393_7	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1339393_8	eggNOG-mapper	861454.HMPREF9099_00337	NA	NA
UHGV-1339393_9	PHROG	phrog_3240	NA	unknown function
UHGV-1339393_9	eggNOG-mapper	1158604.I591_00517	NA	NA
UHGV-1339393_10	UniRef90	UniRef90_R5L7P6	Helix-turn-helix	NA
UHGV-1339393_10	eggNOG-mapper	397287.C807_03075	Helix-turn-helix XRE-family like proteins	NA
UHGV-1339393_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1339393_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1339393_10	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-1339393_11	eggNOG-mapper	221027.JO40_08385	DNA-binding protein PTS system, IIA component	NA
UHGV-1339393_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1339393_11	COG	COG1762	Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	NA
UHGV-1339393_16	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1339393_16	UniRef90	UniRef90_A0A3D1SGI0	AAA_15 domain-containing protein	NA
UHGV-1339393_16	eggNOG-mapper	1027292.HMPREF9372_3397	nuclear chromosome segregation	NA
UHGV-1339393_16	Pfam	PF13476	AAA domain	AAA_23
UHGV-1339393_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1339393_16	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1339393_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1339393_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1339393_18	UniRef90	UniRef90_A0A3D1SF45	Recombinase	NA
UHGV-1339393_18	eggNOG-mapper	1118054.CAGW01000106_gene3693	RecT family	NA
UHGV-1339393_18	Pfam	PF03837	RecT family	RecT
UHGV-1339393_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1339393_18	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1339393_19	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1339393_19	UniRef90	UniRef90_A0A7C1PYA8	MBL fold metallo-hydrolase	NA
UHGV-1339393_19	eggNOG-mapper	218284.CCDN010000001_gene822	Metallo-beta-lactamase superfamily	NA
UHGV-1339393_19	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1339393_20	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1339393_20	UniRef90	UniRef90_A0A3D1SII0	MBL fold metallo-hydrolase	NA
UHGV-1339393_20	eggNOG-mapper	537013.CLOSTMETH_01716	Metallo-beta-lactamase superfamily	NA
UHGV-1339393_20	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1339393_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1339393_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1339393_21	UniRef90	UniRef90_R5GS36	Single-stranded DNA-binding protein	NA
UHGV-1339393_21	eggNOG-mapper	445972.ANACOL_04434	Single-stranded DNA-binding protein	NA
UHGV-1339393_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1339393_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1339393_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1339393_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1339393_21	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1339393_22	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1339393_22	UniRef90	UniRef90_UPI00195B1341	NA	NA
UHGV-1339393_22	eggNOG-mapper	1196322.A370_04251	NA	NA
UHGV-1339393_22	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1339393_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1339393_22	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-1339393_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1339393_23	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1339393_23	UniRef90	UniRef90_A0A2V2FY53	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1339393_23	eggNOG-mapper	272563.CD630_29310	Endodeoxyribonuclease RusA	NA
UHGV-1339393_23	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1339393_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1339393_23	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1339393_24	Pfam	PF09643	YopX protein	YopX
UHGV-1339393_25	PHROG	phrog_3136	NA	unknown function
UHGV-1339393_25	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-1339393_25	Pfam	PF04266	ASCH domain	ASCH
UHGV-1339393_25	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1339393_27	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-1339393_28	PHROG	phrog_22543	NA	unknown function
UHGV-1339393_28	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1339393_29	PHROG	phrog_11237	NA	unknown function
UHGV-1339393_29	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-1339393_29	Structural annotation	NF009167	NA	NA
UHGV-1339393_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1339393_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1339393_30	UniRef90	UniRef90_A0A1H3YVJ7	Phage terminase small subunit	NA
UHGV-1339393_30	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-1339393_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1339393_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1339393_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1339393_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1339393_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1339393_31	UniRef90	UniRef90_A0A174ZXT9	Phage terminase, large subunit, PBSX family	NA
UHGV-1339393_31	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-1339393_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1339393_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1339393_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1339393_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1339393_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-1339393_32	UniRef90	UniRef90_UPI00122F6315	phage portal protein	NA
UHGV-1339393_32	eggNOG-mapper	1235800.C819_00489	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1339393_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1339393_32	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1339393_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1339393_33	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-1339393_33	UniRef90	UniRef90_A0A133ZGG0	Phage protein F-like protein	NA
UHGV-1339393_33	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1339393_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1339393_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1339393_33	COG	COG2369	NA	NA
UHGV-1339393_33	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1339393_36	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1339393_36	eggNOG-mapper	1211844.CBLM010000016_gene1492	NA	NA
UHGV-1339393_36	Pfam	PF14265	NA	DUF4355
UHGV-1339393_36	Structural annotation	PF14265	NA	NA
UHGV-1339393_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-1339393_37	UniRef90	UniRef90_R6RKD0	Gp7	NA
UHGV-1339393_37	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-1339393_37	Structural annotation	PF19821, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-1339393_38	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1339393_38	UniRef90	UniRef90_A0A175A0L9	Phage gp6-like head-tail connector protein	NA
UHGV-1339393_38	eggNOG-mapper	1499683.CCFF01000014_gene3907	Phage gp6-like head-tail connector protein	NA
UHGV-1339393_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1339393_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1339393_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1339393_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1339393_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1339393_40	UniRef90	UniRef90_A0A1M5ZM69	Phage protein, HK97 gp10 family	NA
UHGV-1339393_40	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1339393_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1339393_40	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1339393_40	Structural annotation	PF06763, TIGR01725, COG5005	NA	NA
UHGV-1339393_41	Structural annotation	PF05657	NA	NA
UHGV-1339393_42	PHROG	phrog_158	major tail protein	tail
UHGV-1339393_42	UniRef90	UniRef90_UPI000B4AA6D0	phage tail protein	NA
UHGV-1339393_42	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-1339393_42	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1339393_44	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1339393_44	eggNOG-mapper	1215915.BN193_09055	phage tail tape measure protein	NA
UHGV-1339393_44	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-1339393_45	PHROG	phrog_1194	NA	unknown function
UHGV-1339393_45	eggNOG-mapper	243164.DET1077	NA	NA
UHGV-1339393_45	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1339393_46	PHROG	phrog_23052	NA	unknown function
UHGV-1339393_46	eggNOG-mapper	1235802.C823_01534	NA	NA
UHGV-1339393_46	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1339393_47	PHROG	phrog_4492	tail fiber protein	tail
UHGV-1339393_47	eggNOG-mapper	756499.Desde_1105	NA	NA
UHGV-1339393_47	Structural annotation	PF21621, PF21253, MF_01537, NF007875, COG3123	NA	NA
UHGV-1339393_49	PHROG	phrog_199	holin	lysis
UHGV-1339393_49	UniRef90	UniRef90_R5GZX1	Toxin secretion/phage lysis holin	NA
UHGV-1339393_49	eggNOG-mapper	1120746.CCNL01000014_gene2113	toxin secretion phage lysis holin	NA
UHGV-1339393_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1339393_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1339393_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1339393_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1339393_50	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA