UHGV-1339490

Genome information

Genome length 34,907 bps

CDS count 62

Completeness 55.85% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-1339490
vOTU ID	vOTU-018393
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341697_NODE_404_length_34907_cov_3.342878
BioSample	SAMN00715247
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.41
Jumbo phage	No

Genome content
Genome length	34,907 bps
GC content	46.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.49%
Average CDS length	520.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1339490_4	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1339490_4	UniRef90	UniRef90_UPI001472A545	siphovirus Gp157 family protein	NA
UHGV-1339490_4	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-1339490_4	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1339490_4	Structural annotation	PF05565	NA	NA
UHGV-1339490_5	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1339490_5	UniRef90	UniRef90_UPI001402D75D	ERF family protein	NA
UHGV-1339490_5	eggNOG-mapper	1209989.TepiRe1_1126	ERF superfamily	NA
UHGV-1339490_5	Pfam	PF04404	ERF superfamily	ERF
UHGV-1339490_5	Structural annotation	PF04404	NA	NA
UHGV-1339490_6	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1339490_7	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1339490_7	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-1339490_7	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-1339490_8	PHROG	phrog_1934	NA	unknown function
UHGV-1339490_8	UniRef90	UniRef90_UPI0018AC0226	zinc-finger-containing protein	NA
UHGV-1339490_8	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-1339490_8	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-1339490_9	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1339490_9	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1339490_9	UniRef90	UniRef90_A0A2S0M9D0	HNHc domain-containing protein	NA
UHGV-1339490_9	eggNOG-mapper	1174528.JH992892_gene6517	reverse transcriptase	NA
UHGV-1339490_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1339490_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1339490_9	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1339490_10	PHROG	phrog_15768	NA	unknown function
UHGV-1339490_10	UniRef90	UniRef90_A0A069CV46	RepA_N domain-containing protein	NA
UHGV-1339490_10	eggNOG-mapper	1329250.WOSG25_090160	Replication initiator protein A (RepA) N-terminus	NA
UHGV-1339490_10	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-1339490_10	Structural annotation	PF06970, TIGR01714, COG5625	NA	NA
UHGV-1339490_11	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1339490_11	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1339490_11	UniRef90	UniRef90_U7UMV8	IstB-like ATP-binding protein	NA
UHGV-1339490_11	eggNOG-mapper	1111454.HMPREF1250_0279	DNA replication protein	NA
UHGV-1339490_11	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-1339490_11	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1339490_11	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1339490_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1339490_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1339490_12	UniRef90	UniRef90_A0A355U095	Single-stranded DNA-binding protein	NA
UHGV-1339490_12	eggNOG-mapper	706434.HMPREF9429_00712	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1339490_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1339490_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1339490_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1339490_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1339490_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1339490_14	eggNOG-mapper	706434.HMPREF9429_00398	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1339490_14	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1339490_15	PHROG	phrog_4074	NA	unknown function
UHGV-1339490_15	eggNOG-mapper	1232428.CAVO010000003_gene1016	NA	NA
UHGV-1339490_15	Structural annotation	TIGR04550	NA	NA
UHGV-1339490_17	PHROG	phrog_236	nucleotide kinase	other
UHGV-1339490_17	UniRef90	UniRef90_UPI000DA60B0D	NA	NA
UHGV-1339490_17	eggNOG-mapper	1209989.TepiRe1_2623	NA	NA
UHGV-1339490_17	Pfam	PF11753	NA	DUF3310
UHGV-1339490_18	PHROG	phrog_37395	NA	unknown function
UHGV-1339490_20	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-1339490_20	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1339490_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1339490_21	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1339490_21	UniRef90	UniRef90_A0A2S0M9F1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1339490_21	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-1339490_25	eggNOG-mapper	1273103.NM10_01139	NA	NA
UHGV-1339490_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1339490_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1339490_26	UniRef90	UniRef90_S7J909	Cytosine-specific methyltransferase	NA
UHGV-1339490_26	eggNOG-mapper	1273103.NM10_02362	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1339490_26	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1339490_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1339490_26	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1339490_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1339490_26	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1339490_27	PHROG	phrog_11947	NA	unknown function
UHGV-1339490_36	PHROG	phrog_774	NA	unknown function
UHGV-1339490_36	Structural annotation	PF06657, MF_01506, TIGR03090	NA	NA
UHGV-1339490_38	PHROG	phrog_3878	NA	unknown function
UHGV-1339490_41	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-1339490_41	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1339490_42	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1339490_42	eggNOG-mapper	158190.SpiGrapes_2456	radical SAM domain protein	NA
UHGV-1339490_42	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1339490_43	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1339490_43	eggNOG-mapper	158190.SpiGrapes_2456	radical SAM domain protein	NA
UHGV-1339490_43	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1339490_46	PHROG	phrog_13890	NA	unknown function
UHGV-1339490_46	UniRef90	UniRef90_UPI00189F4C1E	antitoxin	NA
UHGV-1339490_46	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-1339490_49	PHROG	phrog_1233	NA	unknown function
UHGV-1339490_49	UniRef90	UniRef90_UPI000C850486	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1339490_49	eggNOG-mapper	1540257.JQMW01000009_gene3748	NA	NA
UHGV-1339490_49	Structural annotation	PF13058	NA	NA
UHGV-1339490_50	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1339490_50	UniRef90	UniRef90_A0A2S0M9J8	Transposase	NA
UHGV-1339490_50	eggNOG-mapper	1232453.BAIF02000011_gene3351	HNH endonuclease	NA
UHGV-1339490_50	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1339490_50	Structural annotation	PF07141	NA	NA
UHGV-1339490_51	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1339490_51	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1339490_51	UniRef90	UniRef90_A0A6M3IX88	Putative terminase	NA
UHGV-1339490_51	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-1339490_51	COG	COG1783	Phage terminase large subunit	NA
UHGV-1339490_51	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1339490_52	PHROG	phrog_1216	portal protein	head and packaging
UHGV-1339490_52	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-1339490_52	eggNOG-mapper	1232428.CAVO010000067_gene425	Membrane	NA
UHGV-1339490_52	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1339490_52	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1339490_54	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-1339490_55	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1339490_55	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-1339490_55	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-1339490_55	Pfam	PF17236	NA	DUF5309
UHGV-1339490_55	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-1339490_57	Structural annotation	PF20387	NA	NA
UHGV-1339490_58	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-1339490_58	Structural annotation	PF20387	NA	NA
UHGV-1339490_59	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-1339490_59	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1339490_59	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-1339490_60	PHROG	phrog_5417	NA	unknown function
UHGV-1339490_60	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-1339490_60	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-1339490_60	Structural annotation	PF12571	NA	NA
UHGV-1339490_61	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-1339490_61	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-1339490_62	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-1339490_62	COG	COG4675	Phage tail collar domain	NA