UHGV-1340754

Genome information

Genome length 33,209 bps

CDS count 53

Completeness 57.60% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-1340754
vOTU ID	vOTU-024672
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341635_NODE_241_length_33209_cov_2.081679
BioSample	SAMN00715185
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.6
Jumbo phage	No

Genome content
Genome length	33,209 bps
GC content	40.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	90.32%
Average CDS length	570.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1340754_1	UniRef90	UniRef90_UPI001D011ACB	zinc ribbon domain-containing protein	NA
UHGV-1340754_1	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-1340754_4	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-1340754_8	PHROG	phrog_2316	NA	unknown function
UHGV-1340754_8	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-1340754_8	eggNOG-mapper	1157490.EL26_01915	NA	NA
UHGV-1340754_8	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-1340754_9	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1340754_9	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-1340754_9	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-1340754_9	COG	COG5410	NA	NA
UHGV-1340754_9	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1340754_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1340754_10	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-1340754_10	eggNOG-mapper	203119.Cthe_1732	sigma factor activity	NA
UHGV-1340754_10	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1340754_10	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1340754_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-1340754_11	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-1340754_11	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1340754_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1340754_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1340754_12	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-1340754_13	PHROG	phrog_909	major head protein	head and packaging
UHGV-1340754_13	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-1340754_14	PHROG	phrog_29	major head protein	head and packaging
UHGV-1340754_14	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-1340754_14	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-1340754_14	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1340754_14	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1340754_15	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-1340754_15	Structural annotation	PF21169	NA	NA
UHGV-1340754_16	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-1340754_17	PHROG	phrog_4105	NA	unknown function
UHGV-1340754_17	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1340754_18	PHROG	phrog_443	holin	lysis
UHGV-1340754_18	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-1340754_18	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-1340754_18	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1340754_18	Structural annotation	PF16945	NA	NA
UHGV-1340754_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1340754_20	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-1340754_20	AcrCatalog	cluster_24841	NA	NA
UHGV-1340754_21	Structural annotation	PF05657	NA	NA
UHGV-1340754_22	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-1340754_22	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1340754_25	PHROG	phrog_14030	NA	unknown function
UHGV-1340754_25	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-1340754_25	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1340754_25	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1340754_26	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1340754_26	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-1340754_26	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-1340754_26	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1340754_27	PHROG	phrog_11489	NA	unknown function
UHGV-1340754_27	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-1340754_27	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1340754_28	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-1340754_28	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-1340754_28	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-1340754_29	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1340754_29	UniRef90	UniRef90_A0A1I0BKG6	BRO family, N-terminal domain	NA
UHGV-1340754_29	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-1340754_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1340754_29	COG	COG3617	Prophage antirepressor	NA
UHGV-1340754_29	Structural annotation	PF02498, COG3617	NA	NA
UHGV-1340754_30	PHROG	phrog_1194	NA	unknown function
UHGV-1340754_30	Pfam	PF20458	NA	DUF6711
UHGV-1340754_30	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1340754_31	PHROG	phrog_18190	NA	unknown function
UHGV-1340754_31	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-1340754_31	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-1340754_31	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1340754_31	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1340754_32	PHROG	phrog_17196	kinase	other
UHGV-1340754_32	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-1340754_32	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-1340754_33	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-1340754_34	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-1340754_35	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1340754_35	Structural annotation	NF040910	NA	NA
UHGV-1340754_38	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1340754_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1340754_38	UniRef90	UniRef90_A0A1Q6LL24	HTH cro/C1-type domain-containing protein	NA
UHGV-1340754_38	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-1340754_38	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1340754_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1340754_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1340754_38	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1340754_41	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-1340754_41	UniRef90	UniRef90_A0A173RD24	ORF6N domain	NA
UHGV-1340754_41	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-1340754_41	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1340754_41	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1340754_46	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1340754_46	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-1340754_46	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-1340754_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1340754_46	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1340754_46	COG	COG3617	Prophage antirepressor	NA
UHGV-1340754_46	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-1340754_49	PHROG	phrog_26861	NA	unknown function
UHGV-1340754_49	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-1340754_49	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-1340754_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1340754_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1340754_49	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1340754_50	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1340754_50	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1340754_50	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-1340754_50	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-1340754_50	Pfam	PF13476	AAA domain	AAA_23
UHGV-1340754_50	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1340754_50	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1340754_51	eggNOG-mapper	1449126.JQKL01000024_gene2354	NA	NA
UHGV-1340754_52	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-1340754_53	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1340754_53	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-1340754_53	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-1340754_53	Structural annotation	NF007351, COG3723	NA	NA